| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is sldA [H]
Identifier: 197105054
GI number: 197105054
Start: 1792581
End: 1794995
Strand: Direct
Name: sldA [H]
Synonym: PHZ_c1591
Alternate gene names: 197105054
Gene position: 1792581-1794995 (Clockwise)
Preceding gene: 197105051
Following gene: 197105055
Centisome position: 44.86
GC content: 72.88
Gene sequence:
>2415_bases ATGGCGCTGGAGCGCGCGCACGGCCGACGCGGGGCCGGAACCTGGATCGCCATGGCGTTCGGCGTCCTGCTGGGCCTGAT CGGCGTGGTGCTGGCGATCGGCGGCGCCTGGCTGGTCGTGATCGGCGGCTCTCCCTACTACCTGCTCGCGGGCCTGGGCC TGCTGGCGTCGGGCTGGTTCCTCTTCCAGGGCCGGGTGCTCGGCGCGTGGATCTATGCGGCGGTGTTCGTCGCGACCCTG GTCTGGGCGGTCTGGGAGGTGGGGCTCGCGGGCTGGCCGCTGATCCCCCGGGTGTTCGGACCGGCGATCCTGTTCCTGCT GGCGATGGCCGTGGTTCCGGCGCTGACTCCGCAGCGGACGCCGCGCCGCATCGCCCTGGCCGGCGCGGTCGGCCTCGTGG CCGTCGTCGTGGTCGGCGGGATCGCCATCGCGGTCGCGAACCGGCCGGACGCGCCGCGGCCGCTGCCCGCCGCCGCGATG GCCATGACCGACCCCTCGCCGATGACCGTGGGCGCGGACTGGCCGGCCTACGGCGGGACCTACGCCGCCCACCGTTACTC GCCCCTGGCCCAGATCACGCCGGACAACGTCGGCCGGCTGGAGCGCGCCTGGGTGGCCCACACGCGCGACCTGCCCAGCG AGCGGGCGAAGAAGAAATACGGGGCCGAAACGACGCCGCTGAAGGTCGGCGATACGCTCTACCTCTGCTCGGCCAAGAAC ATCCTGATCGCGCTGGATCCCGCGACCGGCCGCGAACGCTGGCGTTACGACCCGAAGGTCTCGGACGACTGGATTCCCTA CACCGCCGCCTGCCGGGGCGTGGTCTACCACCAGACCCCCGGCGCGGACCCCGGCCAGGCCTGCGCGGCCCGGATCATCG AGGGCACGCTGGACGGGCGGCTGATCGCGGTGGACTCGCGCACCGGCCGGCCCTGCGCCGACTTCGGCCGCGGCGGCCAG GTGGATATTAAGCAGGGCATGGGCCCGGTGCATCCGGGCATGGTCTCGATCACCTCGCCGCCGGTGATCGTGCGCGGGGT GGTCGTCACCGGCCACCAGGTGCTGGACGGCCAGGAGAACTCGGCGCCCTCGGGCGTGATCCAGGGCTTCGACGCCGTCA CGGGCGAGCAGCGCTGGGCCTGGGACCTCGGCCGGCCGGGCGTGACGACGCCGGCCGCCCCGGACGAGACCTACACCCGC GGCACGCCCAACATGTGGACCATCGCCAGCGGCGACGAGGCCCTGGGGCACGTCTATCTGCCGATGGGCAATTCGGCCGT GGACTACTGGAGCAGCGACCGCTCGCCCCAGGAGAACTTCTACGCCACCTCGCTGGTGGCGCTGGACGTGACCACGGGCG CGCCGGCCTGGCGCTTCCAGACGGTGCACATGGACGTCTGGGACTACGACCTCGGCGGGCAGGGCACGCTGGTGGACTTC CCCACCGCGGCGGGGACGGTCCCGGCGATCGTGCTGCCGAGCAAGCAGGGCGACATCTATGTCCTGGACCGGCGCACCGG GCGGCCCATCACGCCGGTGGAGGAGCGGCCGGTCCCGCAGGGCGGCGTCGAGCCGCAGATGCGCACGGCGACCCAGCCGT TCTCGCGCTACCACACCCTGGCCAAGCCCGACCTGACCGAGCGGGACATGTGGGGCATGTCGCCGATCGACCAGATGATC TGCCGCATCCAGTTCCGGCGGGCGTCCTACAAGGGCATCTACACGCCGCCGACCGCGGACCGGCGCTGGATCCAGTATCC GGGCTACAACGGCGGCTCGGACTGGGGCGGGATCGCCGTCGACCCGCGCCGCGGCGTGATCGTCGCCAACTACAACGACA TGCCGAACTACAACCGTCTCGTCCCGCGCTCGGAGGTTGAGCGGAAGGGCTGGAGCCCGCGCAGCCAGGCGCGCGGCGGC GACCTCGGCGGGCCGGAAGGGGCGGGCGACCCGCAGGCCGGCACGCCCTACGGCGTGCAGGTGAACGCCGGCTGGCGGAT GCCCTTCACCAACCTGCTGTGCAAGGAGCCCCCGTACGGCGGGATCCGGGCCATCGACCTGCGCACCGGCCGCACGCTGT GGGACCGGCCGTTCGGGACGGCGCGACGCAACGGGCCGTTCGGCATCCCCTCGATGCTGCCGCTGGAGATCGGCACGCCG AACAACGGCGGCGCCGTGGTCACCGCCGGCGGGGTGGTGTTCATCGCCGCGGCCACCGACAACCTGGTCCGCGCCATCGA CCTTCGGACCGGCGAGACGCTGTGGAGCGACGTCCTGCCGGCCGGCGGCCAGGCCACCCCGATGACCTACGAGGCGAACG GGCGGCAGTACGTCGTGATCATGGCCGGCGGCCACCACTTCATGGAGACCCCGGTCGGCGACGAGGTGATCGCCTACGCC CTGCCGCAGCGCTGA
Upstream 100 bases:
>100_bases GCGCGCCGGGGGAACCGCCCGCCGCGGTGGAGGTTCCCGGAACCTTAGCCGGTGAGGCCGGTTTCCGAAGGCAAGCCTAC AACCAGGAGGAGGGACGCGG
Downstream 100 bases:
>100_bases GGCCCGGTCAGGCGAGCGTGCGGGAGGCGGCCGGCAGCGGGTCCAGCTCGGCGTTCAGCGGCGGGCCGATCCGCAGTTCG GCGCGCAGACCGTCGGGGGC
Product: glucose dehydrogenase
Products: NA
Alternate protein names: D-arabitol dehydrogenase large subunit; ARDH; D-sorbitol dehydrogenase subunit sldA; SLDH; Gluconate/polyol dehydrogenase large subunit [H]
Number of amino acids: Translated: 804; Mature: 803
Protein sequence:
>804_residues MALERAHGRRGAGTWIAMAFGVLLGLIGVVLAIGGAWLVVIGGSPYYLLAGLGLLASGWFLFQGRVLGAWIYAAVFVATL VWAVWEVGLAGWPLIPRVFGPAILFLLAMAVVPALTPQRTPRRIALAGAVGLVAVVVVGGIAIAVANRPDAPRPLPAAAM AMTDPSPMTVGADWPAYGGTYAAHRYSPLAQITPDNVGRLERAWVAHTRDLPSERAKKKYGAETTPLKVGDTLYLCSAKN ILIALDPATGRERWRYDPKVSDDWIPYTAACRGVVYHQTPGADPGQACAARIIEGTLDGRLIAVDSRTGRPCADFGRGGQ VDIKQGMGPVHPGMVSITSPPVIVRGVVVTGHQVLDGQENSAPSGVIQGFDAVTGEQRWAWDLGRPGVTTPAAPDETYTR GTPNMWTIASGDEALGHVYLPMGNSAVDYWSSDRSPQENFYATSLVALDVTTGAPAWRFQTVHMDVWDYDLGGQGTLVDF PTAAGTVPAIVLPSKQGDIYVLDRRTGRPITPVEERPVPQGGVEPQMRTATQPFSRYHTLAKPDLTERDMWGMSPIDQMI CRIQFRRASYKGIYTPPTADRRWIQYPGYNGGSDWGGIAVDPRRGVIVANYNDMPNYNRLVPRSEVERKGWSPRSQARGG DLGGPEGAGDPQAGTPYGVQVNAGWRMPFTNLLCKEPPYGGIRAIDLRTGRTLWDRPFGTARRNGPFGIPSMLPLEIGTP NNGGAVVTAGGVVFIAAATDNLVRAIDLRTGETLWSDVLPAGGQATPMTYEANGRQYVVIMAGGHHFMETPVGDEVIAYA LPQR
Sequences:
>Translated_804_residues MALERAHGRRGAGTWIAMAFGVLLGLIGVVLAIGGAWLVVIGGSPYYLLAGLGLLASGWFLFQGRVLGAWIYAAVFVATL VWAVWEVGLAGWPLIPRVFGPAILFLLAMAVVPALTPQRTPRRIALAGAVGLVAVVVVGGIAIAVANRPDAPRPLPAAAM AMTDPSPMTVGADWPAYGGTYAAHRYSPLAQITPDNVGRLERAWVAHTRDLPSERAKKKYGAETTPLKVGDTLYLCSAKN ILIALDPATGRERWRYDPKVSDDWIPYTAACRGVVYHQTPGADPGQACAARIIEGTLDGRLIAVDSRTGRPCADFGRGGQ VDIKQGMGPVHPGMVSITSPPVIVRGVVVTGHQVLDGQENSAPSGVIQGFDAVTGEQRWAWDLGRPGVTTPAAPDETYTR GTPNMWTIASGDEALGHVYLPMGNSAVDYWSSDRSPQENFYATSLVALDVTTGAPAWRFQTVHMDVWDYDLGGQGTLVDF PTAAGTVPAIVLPSKQGDIYVLDRRTGRPITPVEERPVPQGGVEPQMRTATQPFSRYHTLAKPDLTERDMWGMSPIDQMI CRIQFRRASYKGIYTPPTADRRWIQYPGYNGGSDWGGIAVDPRRGVIVANYNDMPNYNRLVPRSEVERKGWSPRSQARGG DLGGPEGAGDPQAGTPYGVQVNAGWRMPFTNLLCKEPPYGGIRAIDLRTGRTLWDRPFGTARRNGPFGIPSMLPLEIGTP NNGGAVVTAGGVVFIAAATDNLVRAIDLRTGETLWSDVLPAGGQATPMTYEANGRQYVVIMAGGHHFMETPVGDEVIAYA LPQR >Mature_803_residues ALERAHGRRGAGTWIAMAFGVLLGLIGVVLAIGGAWLVVIGGSPYYLLAGLGLLASGWFLFQGRVLGAWIYAAVFVATLV WAVWEVGLAGWPLIPRVFGPAILFLLAMAVVPALTPQRTPRRIALAGAVGLVAVVVVGGIAIAVANRPDAPRPLPAAAMA MTDPSPMTVGADWPAYGGTYAAHRYSPLAQITPDNVGRLERAWVAHTRDLPSERAKKKYGAETTPLKVGDTLYLCSAKNI LIALDPATGRERWRYDPKVSDDWIPYTAACRGVVYHQTPGADPGQACAARIIEGTLDGRLIAVDSRTGRPCADFGRGGQV DIKQGMGPVHPGMVSITSPPVIVRGVVVTGHQVLDGQENSAPSGVIQGFDAVTGEQRWAWDLGRPGVTTPAAPDETYTRG TPNMWTIASGDEALGHVYLPMGNSAVDYWSSDRSPQENFYATSLVALDVTTGAPAWRFQTVHMDVWDYDLGGQGTLVDFP TAAGTVPAIVLPSKQGDIYVLDRRTGRPITPVEERPVPQGGVEPQMRTATQPFSRYHTLAKPDLTERDMWGMSPIDQMIC RIQFRRASYKGIYTPPTADRRWIQYPGYNGGSDWGGIAVDPRRGVIVANYNDMPNYNRLVPRSEVERKGWSPRSQARGGD LGGPEGAGDPQAGTPYGVQVNAGWRMPFTNLLCKEPPYGGIRAIDLRTGRTLWDRPFGTARRNGPFGIPSMLPLEIGTPN NGGAVVTAGGVVFIAAATDNLVRAIDLRTGETLWSDVLPAGGQATPMTYEANGRQYVVIMAGGHHFMETPVGDEVIAYAL PQR
Specific function: Catalyzes the oxidation of glycerol to glycerone. Also acts, more slowly, on a number of other polyols including D- sorbitol, D-arabinitol, D-mannitol, meso-erythritol, adonitol and propylene glycol [H]
COG id: COG4993
COG function: function code G; Glucose dehydrogenase
Gene ontology:
Cell location: Secreted (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial PQQ dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1786316, Length=808, Percent_Identity=41.5841584158416, Blast_Score=556, Evalue=1e-159,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019556 - InterPro: IPR019551 - InterPro: IPR018391 - InterPro: IPR002372 - InterPro: IPR011047 [H]
Pfam domain/function: PF01011 PQQ; PF10535 PQQ_C; PF10527 PQQ_N [H]
EC number: =1.1.99.22 [H]
Molecular weight: Translated: 86296; Mature: 86164
Theoretical pI: Translated: 8.30; Mature: 8.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALERAHGRRGAGTWIAMAFGVLLGLIGVVLAIGGAWLVVIGGSPYYLLAGLGLLASGWF CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCEE LFQGRVLGAWIYAAVFVATLVWAVWEVGLAGWPLIPRVFGPAILFLLAMAVVPALTPQRT EEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC PRRIALAGAVGLVAVVVVGGIAIAVANRPDAPRPLPAAAMAMTDPSPMTVGADWPAYGGT CCEEEEHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHEEECCCCCEEECCCCCCCCCC YAAHRYSPLAQITPDNVGRLERAWVAHTRDLPSERAKKKYGAETTPLKVGDTLYLCSAKN CHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEECCEEEEEECCC ILIALDPATGRERWRYDPKVSDDWIPYTAACRGVVYHQTPGADPGQACAARIIEGTLDGR EEEEECCCCCHHHCCCCCCCCCCCCCHHHHHCCEEEECCCCCCHHHHHHHHHHHHCCCCE LIAVDSRTGRPCADFGRGGQVDIKQGMGPVHPGMVSITSPPVIVRGVVVTGHQVLDGQEN EEEEECCCCCCHHHHCCCCEEEHHCCCCCCCCCEEEECCCCEEEEEEEEECCEEECCCCC SAPSGVIQGFDAVTGEQRWAWDLGRPGVTTPAAPDETYTRGTPNMWTIASGDEALGHVYL CCCCHHHHCCHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEE PMGNSAVDYWSSDRSPQENFYATSLVALDVTTGAPAWRFQTVHMDVWDYDLGGQGTLVDF ECCCCCHHHCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCEEEEC PTAAGTVPAIVLPSKQGDIYVLDRRTGRPITPVEERPVPQGGVEPQMRTATQPFSRYHTL CCCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHCCCCCCCCCCCCHHHHCCHHHHHHCC AKPDLTERDMWGMSPIDQMICRIQFRRASYKGIYTPPTADRRWIQYPGYNGGSDWGGIAV CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCEEECCCCCCCCCCCCEEE DPRRGVIVANYNDMPNYNRLVPRSEVERKGWSPRSQARGGDLGGPEGAGDPQAGTPYGVQ CCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEE VNAGWRMPFTNLLCKEPPYGGIRAIDLRTGRTLWDRPFGTARRNGPFGIPSMLPLEIGTP ECCCCCCCHHHHHCCCCCCCCEEEEEEECCCCHHCCCCCCCCCCCCCCCCCCCEEEECCC NNGGAVVTAGGVVFIAAATDNLVRAIDLRTGETLWSDVLPAGGQATPMTYEANGRQYVVI CCCCEEEEECCEEEEEECCCCEEEEEECCCCCHHHHHHCCCCCCCCCEEEECCCCEEEEE MAGGHHFMETPVGDEVIAYALPQR EECCCEEECCCCCCCEEEEECCCC >Mature Secondary Structure ALERAHGRRGAGTWIAMAFGVLLGLIGVVLAIGGAWLVVIGGSPYYLLAGLGLLASGWF CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCEE LFQGRVLGAWIYAAVFVATLVWAVWEVGLAGWPLIPRVFGPAILFLLAMAVVPALTPQRT EEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC PRRIALAGAVGLVAVVVVGGIAIAVANRPDAPRPLPAAAMAMTDPSPMTVGADWPAYGGT CCEEEEHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHEEECCCCCEEECCCCCCCCCC YAAHRYSPLAQITPDNVGRLERAWVAHTRDLPSERAKKKYGAETTPLKVGDTLYLCSAKN CHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEECCEEEEEECCC ILIALDPATGRERWRYDPKVSDDWIPYTAACRGVVYHQTPGADPGQACAARIIEGTLDGR EEEEECCCCCHHHCCCCCCCCCCCCCHHHHHCCEEEECCCCCCHHHHHHHHHHHHCCCCE LIAVDSRTGRPCADFGRGGQVDIKQGMGPVHPGMVSITSPPVIVRGVVVTGHQVLDGQEN EEEEECCCCCCHHHHCCCCEEEHHCCCCCCCCCEEEECCCCEEEEEEEEECCEEECCCCC SAPSGVIQGFDAVTGEQRWAWDLGRPGVTTPAAPDETYTRGTPNMWTIASGDEALGHVYL CCCCHHHHCCHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEE PMGNSAVDYWSSDRSPQENFYATSLVALDVTTGAPAWRFQTVHMDVWDYDLGGQGTLVDF ECCCCCHHHCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCEEEEC PTAAGTVPAIVLPSKQGDIYVLDRRTGRPITPVEERPVPQGGVEPQMRTATQPFSRYHTL CCCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHCCCCCCCCCCCCHHHHCCHHHHHHCC AKPDLTERDMWGMSPIDQMICRIQFRRASYKGIYTPPTADRRWIQYPGYNGGSDWGGIAV CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCEEECCCCCCCCCCCCEEE DPRRGVIVANYNDMPNYNRLVPRSEVERKGWSPRSQARGGDLGGPEGAGDPQAGTPYGVQ CCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEE VNAGWRMPFTNLLCKEPPYGGIRAIDLRTGRTLWDRPFGTARRNGPFGIPSMLPLEIGTP ECCCCCCCHHHHHCCCCCCCCEEEEEEECCCCHHCCCCCCCCCCCCCCCCCCCEEEECCC NNGGAVVTAGGVVFIAAATDNLVRAIDLRTGETLWSDVLPAGGQATPMTYEANGRQYVVI CCCCEEEEECCEEEEEECCCCEEEEEECCCCCHHHHHHCCCCCCCCCEEEECCCCEEEEE MAGGHHFMETPVGDEVIAYALPQR EECCCEEECCCCCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA