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The map label for this gene is trbD

Identifier: 197104977

GI number: 197104977

Start: 1717562

End: 1717831

Strand: Direct

Name: trbD

Synonym: PHZ_c1514

Alternate gene names: NA

Gene position: 1717562-1717831 (Clockwise)

Preceding gene: 197104976

Following gene: 197104978

Centisome position: 42.98

GC content: 70.37

Gene sequence:

>270_bases
ATGCAGCAGACACCCACGCCTCCTGGCTTTGAAGCCCCGGTTCACCGCGCCCTCACCGAGCCGGTGTTGCTGGCCGGCGC
GCCGCGCGCCTTCGCCATCGTCAACGGCACCTTGGCGGCCGCCATCGGGCTTGGCCTACGCCTGTGGATCGCCGGCTTGG
CGCTTTGGCTGATCGGCCACGCCTTCGCCGTCTGGGCCGCCAAGCGCGACCCCCACTTCGTCGAGGTGGTGCGGCGGCAC
GTCCGCATCCCGCCCTATCTGGGAATCTGA

Upstream 100 bases:

>100_bases
TTCGACGGCTGATCCAGATCGTCTTCGGCCTCTCGATCGCCTTCGCCGCCTCCAGCTTCTTCCTGTCCTTCTTCTCGTTC
GGCGGCGGGGCGCTGGTCTG

Downstream 100 bases:

>100_bases
CGCGATGTTCGATCTTCGCGAGTACCGCCGGCGTGCGGCCCAGCTTCCCGACTTTCTGCCGTGGGCGGCGCTCGTCGAGC
CGGGCGTGGTGCTCAATAAG

Product: conjugal transfer protein

Products: NA

Alternate protein names: Conjugal Transfer Protein TrbB; Conjugal Transfer Protein; Conjugal Transfer TrbD Transmembrane Protein; Type IV Secretory Pathway VirB3 Family Protein; Conjugal Transfer Trbd Transmembrane Protein; Type IV Secretory Pathway TrbD Component; Type Iv Secretory Pathway Virb3 Family Protein; Conjugal Transfer Protein Trbd; Type IV Secretory Pathway TrbD Component-Like Protein; Conjugative Transfer Protein TrbD; P-Type Conjugative Transfer Protein TrbD

Number of amino acids: Translated: 89; Mature: 89

Protein sequence:

>89_residues
MQQTPTPPGFEAPVHRALTEPVLLAGAPRAFAIVNGTLAAAIGLGLRLWIAGLALWLIGHAFAVWAAKRDPHFVEVVRRH
VRIPPYLGI

Sequences:

>Translated_89_residues
MQQTPTPPGFEAPVHRALTEPVLLAGAPRAFAIVNGTLAAAIGLGLRLWIAGLALWLIGHAFAVWAAKRDPHFVEVVRRH
VRIPPYLGI
>Mature_89_residues
MQQTPTPPGFEAPVHRALTEPVLLAGAPRAFAIVNGTLAAAIGLGLRLWIAGLALWLIGHAFAVWAAKRDPHFVEVVRRH
VRIPPYLGI

Specific function: Unknown

COG id: COG5268

COG function: function code NU; Type IV secretory pathway, TrbD component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9621; Mature: 9621

Theoretical pI: Translated: 11.78; Mature: 11.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQTPTPPGFEAPVHRALTEPVLLAGAPRAFAIVNGTLAAAIGLGLRLWIAGLALWLIGH
CCCCCCCCCCCHHHHHHHCCCHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFAVWAAKRDPHFVEVVRRHVRIPPYLGI
HHHHHHCCCCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MQQTPTPPGFEAPVHRALTEPVLLAGAPRAFAIVNGTLAAAIGLGLRLWIAGLALWLIGH
CCCCCCCCCCCHHHHHHHCCCHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFAVWAAKRDPHFVEVVRRHVRIPPYLGI
HHHHHHCCCCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA