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The map label for this gene is yeaM [C]

Identifier: 197104917

GI number: 197104917

Start: 1648813

End: 1649409

Strand: Direct

Name: yeaM [C]

Synonym: PHZ_c1452

Alternate gene names: 197104917

Gene position: 1648813-1649409 (Clockwise)

Preceding gene: 197104914

Following gene: 197104928

Centisome position: 41.26

GC content: 74.71

Gene sequence:

>597_bases
GTGGGTGACGCCGCCGCTGCAGGCCTGTTGGCTGCCGCGGGCGAGCCGCACCGGGTGGAGACCTCGCGCGGCTTCGACAT
GGTGAGCGTCTACTGCGCAGGTGCCTGGCTGCGGCGGCTGCCCAGCCGACCCGGCGTGGTCCCCGTCAGCGCCTTGCTGA
AGGCGCTGATCGGCGGGATCCCGGACGCCGGCCCGGCGCGCCGCCGCCGCCTGGCGCTGCTCTTCGCCGACGAGGTCCAT
CTCGAGCCGGCGCCCGCCCTCTTCATCCCCGAACTCGCGGGGCGGCTCCTGGGCGTCCTGGCGGCGGCTTTGCGGGCGGA
CCCGGCCGACGAGCGGACGCTCGCGGCCTGGGCGGCCGAGCTTGGGGTCAGCAGCCGCACGCTGGCCCGCGAATTCGAGC
GCCGCGCCCAGCTCACCTTCACCGCCTATCGCCGTCAGGTGCGGCTGAGGGCGGCGCTGATCCGAATGGCGGAAGGCCAG
TCCATCACCCAGGTCGGTCTGGACCTCGGCTTTGGCAGCGCCAGCAACTTCATCCGGGCTTTCCGCGCCGCCACCGGGGT
GACGCCGGCCCGCTACTTCGCCGCGCGCACCGGCTGA

Upstream 100 bases:

>100_bases
GGTTCGAGGCTGGCTTCTCCGGCCACTGGCATGATCATCCGCGGGCGCAGCTGATCTACCCTGAGCAGGGCGTGATGGTG
CTGCACACCGGCCAGGGACA

Downstream 100 bases:

>100_bases
CCTAGGGCTTCCGGATCGCGGTGATCTCGCCCGCGCCGTTCTCGAGCCTCAGGTCGAAGGCCACCTTGTCGCCGACCTCG
ACGTCCCGCACGACCGCCGG

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; AraC-Family Transcriptional Regulator; AraC Family Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator AraC Family Protein; AraC Family Regulatory Helix-Turn-Helix Protein; AraC/XylS Family Transcriptional Regulator; AraC Family Transcription Regulator; Transcriptional Regulator AraC-Family; AraC Family Regulatory Helix-Turn-Helix; HTH-Type Transcriptional Regulator YeaM; Transcriptional Regulator Arac Family; LOW QUALITY PROTEIN AraC-Family Transcriptional Regulator; AraC Protein; AraC-Family Regulatory Protein; AraC-Type Regulatory Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Pyridoxamine 5-Phosphate Oxidase-Related Protein; HTH-Type Transcriptional Regulator GadX; Helix-Turn-Helix Protein; Transcriptional Regulator Protein; HTH-Type Transcriptional Regulator AraC Family; LOW QUALITY PROTEIN AraC Family Transcriptional Regulator; Transcriptional Regulator Transcription Regulator Protein; AraC Family Transcription Regulator Protein

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MGDAAAAGLLAAAGEPHRVETSRGFDMVSVYCAGAWLRRLPSRPGVVPVSALLKALIGGIPDAGPARRRRLALLFADEVH
LEPAPALFIPELAGRLLGVLAAALRADPADERTLAAWAAELGVSSRTLAREFERRAQLTFTAYRRQVRLRAALIRMAEGQ
SITQVGLDLGFGSASNFIRAFRAATGVTPARYFAARTG

Sequences:

>Translated_198_residues
MGDAAAAGLLAAAGEPHRVETSRGFDMVSVYCAGAWLRRLPSRPGVVPVSALLKALIGGIPDAGPARRRRLALLFADEVH
LEPAPALFIPELAGRLLGVLAAALRADPADERTLAAWAAELGVSSRTLAREFERRAQLTFTAYRRQVRLRAALIRMAEGQ
SITQVGLDLGFGSASNFIRAFRAATGVTPARYFAARTG
>Mature_197_residues
GDAAAAGLLAAAGEPHRVETSRGFDMVSVYCAGAWLRRLPSRPGVVPVSALLKALIGGIPDAGPARRRRLALLFADEVHL
EPAPALFIPELAGRLLGVLAAALRADPADERTLAAWAAELGVSSRTLAREFERRAQLTFTAYRRQVRLRAALIRMAEGQS
ITQVGLDLGFGSASNFIRAFRAATGVTPARYFAARTG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788091, Length=161, Percent_Identity=28.5714285714286, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21062; Mature: 20930

Theoretical pI: Translated: 11.67; Mature: 11.67

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDAAAAGLLAAAGEPHRVETSRGFDMVSVYCAGAWLRRLPSRPGVVPVSALLKALIGGI
CCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC
PDAGPARRRRLALLFADEVHLEPAPALFIPELAGRLLGVLAAALRADPADERTLAAWAAE
CCCCHHHHHEEHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LGVSSRTLAREFERRAQLTFTAYRRQVRLRAALIRMAEGQSITQVGLDLGFGSASNFIRA
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHH
FRAATGVTPARYFAARTG
HHHHCCCCHHHHHHCCCC
>Mature Secondary Structure 
GDAAAAGLLAAAGEPHRVETSRGFDMVSVYCAGAWLRRLPSRPGVVPVSALLKALIGGI
CCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC
PDAGPARRRRLALLFADEVHLEPAPALFIPELAGRLLGVLAAALRADPADERTLAAWAAE
CCCCHHHHHEEHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LGVSSRTLAREFERRAQLTFTAYRRQVRLRAALIRMAEGQSITQVGLDLGFGSASNFIRA
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHH
FRAATGVTPARYFAARTG
HHHHCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA