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The map label for this gene is nocR [H]

Identifier: 197104928

GI number: 197104928

Start: 1662225

End: 1663217

Strand: Direct

Name: nocR [H]

Synonym: PHZ_c1463

Alternate gene names: 197104928

Gene position: 1662225-1663217 (Clockwise)

Preceding gene: 197104917

Following gene: 197104935

Centisome position: 41.59

GC content: 68.08

Gene sequence:

>993_bases
CTGGAACTCGTTCAAATTCATAGTTGCGGCGAATTCATGCGCCGAGGTTATGATGCGGCCATGAACCTGACGCTCATCGA
GGCCTTCAGCGCGGTGATGAAGACCGGCTCCACGACCGCCGCCGCCGAGCTGCTGCGCGTGTCGCAGCCTGCCATCAGCC
GCTCGCTGAAGCGGCTCGAGGACACCACCAAGCTGAAGCTGTTCGAGCGAAGCGGTCCTCGGCTGACGCCGACGCCGGAA
GCGCACCTGCTCTACCAGGAGGTCCTCGACACCTTCGTCGGCCTTGACCGACTGCGGCAGTCGGTGGCGCGGATCCGTGC
GGTGGGCACCGGATCGGTGCGGATCGCCAGCTCCGCGGCGCTGGGCCTCTCCTTCGTGCCCAAGGCGCTCAAGCGGTTCA
CGGACCGTCGCCCCGACGTCTCGATCCGCTTCGAGATCGGCAACTCGGTGACGGTCCGCAACCTGGTGGCCAGCGGCTCC
TATGACATCGGCCTGTGCGCCGAGGAGATCGACCGCTCGAACCTGGTGGTGAAGCCGTTCATCGAGACCCGCGGCATTTG
CGTCATGCCGCCGGGCCACCGGCTGATCGGCGAGCCGGTCATCCGCCCCGGGATGCTGGACGGCGAGCGGGTGATCTCCC
TGGCGCCGGACGACACCGCCCGCATCCAGTTCAACGCCGCGCTGGCGTCGGCCGCCGCGACGCCGAAGTTCGTGGTGGAG
ACGCAATTCGCCGCCACCGTTTGCCAGCTGGCGATGGAGGGTGTGGGCGTCGGCTTGACCAACTCGCTCACCTACGTGTC
CGACCGTTTCGAGCCGCTCGGACTGGCGGCGCGGCCGTTCGAGCCGGCGATCGCCTTCCGCTCTCTGATGATCCTGCCGC
CGCATCGGGCCCGCTCGCGATTGGTGGACGAACTGGTGGGGTTTCTGGAGGCCGATCGCGACGCCCTCGCCCAGGCGTGC
GAGAGCCGCTTCGGTCGGTTCTCGCCGCCCTAG

Upstream 100 bases:

>100_bases
GCAAGGCTCTCGAACGCGCCTCCGAGGCCGTCCCCCGGCGTCAGGCAGAGTGTGGGGTCGCGCATGCTGTACTCCCTTCG
GGACCCGGCGTAGCCCGGCC

Downstream 100 bases:

>100_bases
GGCCGGATGGCGAAGACCGCCGCCACTTCCACCGCCGCCCCGAGGGGCAGGCTGCCGGCTCCGACGGCGGCGCGGGCATG
CCGGCCCGCCTCCCCGAACA

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MELVQIHSCGEFMRRGYDAAMNLTLIEAFSAVMKTGSTTAAAELLRVSQPAISRSLKRLEDTTKLKLFERSGPRLTPTPE
AHLLYQEVLDTFVGLDRLRQSVARIRAVGTGSVRIASSAALGLSFVPKALKRFTDRRPDVSIRFEIGNSVTVRNLVASGS
YDIGLCAEEIDRSNLVVKPFIETRGICVMPPGHRLIGEPVIRPGMLDGERVISLAPDDTARIQFNAALASAAATPKFVVE
TQFAATVCQLAMEGVGVGLTNSLTYVSDRFEPLGLAARPFEPAIAFRSLMILPPHRARSRLVDELVGFLEADRDALAQAC
ESRFGRFSPP

Sequences:

>Translated_330_residues
MELVQIHSCGEFMRRGYDAAMNLTLIEAFSAVMKTGSTTAAAELLRVSQPAISRSLKRLEDTTKLKLFERSGPRLTPTPE
AHLLYQEVLDTFVGLDRLRQSVARIRAVGTGSVRIASSAALGLSFVPKALKRFTDRRPDVSIRFEIGNSVTVRNLVASGS
YDIGLCAEEIDRSNLVVKPFIETRGICVMPPGHRLIGEPVIRPGMLDGERVISLAPDDTARIQFNAALASAAATPKFVVE
TQFAATVCQLAMEGVGVGLTNSLTYVSDRFEPLGLAARPFEPAIAFRSLMILPPHRARSRLVDELVGFLEADRDALAQAC
ESRFGRFSPP
>Mature_330_residues
MELVQIHSCGEFMRRGYDAAMNLTLIEAFSAVMKTGSTTAAAELLRVSQPAISRSLKRLEDTTKLKLFERSGPRLTPTPE
AHLLYQEVLDTFVGLDRLRQSVARIRAVGTGSVRIASSAALGLSFVPKALKRFTDRRPDVSIRFEIGNSVTVRNLVASGS
YDIGLCAEEIDRSNLVVKPFIETRGICVMPPGHRLIGEPVIRPGMLDGERVISLAPDDTARIQFNAALASAAATPKFVVE
TQFAATVCQLAMEGVGVGLTNSLTYVSDRFEPLGLAARPFEPAIAFRSLMILPPHRARSRLVDELVGFLEADRDALAQAC
ESRFGRFSPP

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=293, Percent_Identity=35.8361774744027, Blast_Score=167, Evalue=8e-43,
Organism=Escherichia coli, GI1788481, Length=185, Percent_Identity=29.7297297297297, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1787530, Length=241, Percent_Identity=25.7261410788382, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI145693105, Length=237, Percent_Identity=22.3628691983122, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI157672245, Length=225, Percent_Identity=23.5555555555556, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787601, Length=229, Percent_Identity=26.2008733624454, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787806, Length=241, Percent_Identity=25.7261410788382, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081904, Length=246, Percent_Identity=27.2357723577236, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35958; Mature: 35958

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELVQIHSCGEFMRRGYDAAMNLTLIEAFSAVMKTGSTTAAAELLRVSQPAISRSLKRLE
CCEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHH
DTTKLKLFERSGPRLTPTPEAHLLYQEVLDTFVGLDRLRQSVARIRAVGTGSVRIASSAA
HHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHH
LGLSFVPKALKRFTDRRPDVSIRFEIGNSVTVRNLVASGSYDIGLCAEEIDRSNLVVKPF
HHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEHHHHHCCCCCCEEEHHHHCCCCCEEEEH
IETRGICVMPPGHRLIGEPVIRPGMLDGERVISLAPDDTARIQFNAALASAAATPKFVVE
HCCCCEEEECCCCHHCCCCCCCCCCCCCCEEEEECCCCCEEEEEHHHHHHHCCCCCEEEE
TQFAATVCQLAMEGVGVGLTNSLTYVSDRFEPLGLAARPFEPAIAFRSLMILPPHRARSR
HHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHEECCCHHHHHH
LVDELVGFLEADRDALAQACESRFGRFSPP
HHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MELVQIHSCGEFMRRGYDAAMNLTLIEAFSAVMKTGSTTAAAELLRVSQPAISRSLKRLE
CCEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHH
DTTKLKLFERSGPRLTPTPEAHLLYQEVLDTFVGLDRLRQSVARIRAVGTGSVRIASSAA
HHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHH
LGLSFVPKALKRFTDRRPDVSIRFEIGNSVTVRNLVASGSYDIGLCAEEIDRSNLVVKPF
HHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEHHHHHCCCCCCEEEHHHHCCCCCEEEEH
IETRGICVMPPGHRLIGEPVIRPGMLDGERVISLAPDDTARIQFNAALASAAATPKFVVE
HCCCCEEEECCCCHHCCCCCCCCCCCCCCEEEEECCCCCEEEEEHHHHHHHCCCCCEEEE
TQFAATVCQLAMEGVGVGLTNSLTYVSDRFEPLGLAARPFEPAIAFRSLMILPPHRARSR
HHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHEECCCHHHHHH
LVDELVGFLEADRDALAQACESRFGRFSPP
HHHHHHHHHHCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]