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The map label for this gene is ygcA [C]

Identifier: 197104814

GI number: 197104814

Start: 1529326

End: 1530555

Strand: Direct

Name: ygcA [C]

Synonym: PHZ_c1348

Alternate gene names: 197104814

Gene position: 1529326-1530555 (Clockwise)

Preceding gene: 197104812

Following gene: 197104815

Centisome position: 38.27

GC content: 75.04

Gene sequence:

>1230_bases
GTGGAGCTTGCCATCGAGACCATGGGCGGGGAGGGCGACGGCGTGGCCGCCGGGCCTATCTTCGTGCCGTTCACCCTGCC
GGGCGAGCGCGTCCGGGTGCAGGGCCGGGGCGACCGCCGGGAACTGCTGGAGGTGCTGGCGGCCAGCCGCGAACGGGTCG
AGCCGCCGTGCCCGCACTTCTTCGCCTGCGGCGGCTGCGCGCTGCAGCACTGGGCGCAGGCGCCGTACCTCGCCTGGAAG
GCCGACCGGCTGCGCACGACCCTGGCGCGCCAGCACATCGAGACGCAGATCCTGACGCCCTACGCCACGGGACCGGGCAC
GCGCCGCCGCGTGACCCTGCACGCCCGCCGCGGGAGCCGGGATGCCGCCCGCCTCGGCTACAAGGCGCGCAAGTCCTGGG
ACCTGGTGGACATCGCCGTCTGCCCGATCTCCGAGCCCGCCATCCAGGCCGCCATTCCGGCGCTGAAGCGGCTCGCCGCG
CCCCTGTTCGAGCATCCCAAGTCGGCCCCGTCGCTGCACGTGACGCTCAGCGACACCGGGCTCGACATCGACATCACCGG
CGTCGAGGCCAAGAGCGGCGGCCTTTCGGGCGACGCCAGGATGCAGCTCGCCGAGCGGGCCGCCGAGGCCGACTTCGCCC
GCGTCACCCTGGCCGGGGAGGTCGCCTACATGGCCCGCAGCCCCCAGGTCCGCCTGGGCCCGGCGGTCGTCAGCCTGCCG
CCCGGCGCCTTCCTGCAGGCGACCCGCGACGCCGAGGCGGCCATGGCCGAGTTCGTCGCCGGCGCGGCGGCCGGCGCTTC
GCGCATCGCCGACCTCTACTGCGGGGTGGGCACGTTCACCTTCCGCCTGGCCGAGGTCGCCCCGGTCCACGCCGCCGACT
TCGCAGCCGAGGCCGTTCAGGCGCTCACGGCGGCCCTGGCCGGCGCGCCGGGGCTGAAGGGCGTGACCGCCGAGGCCCGC
GACCTCGTCCGGCGTCCCGTCCTGGCCGAGGAGCTCAAGAAGACCGACGTCGCCGTCTTCGACCCGCCCCGCGCCGGGGC
GGCCGAGCAGACCGCCGAGCTCGCCCGCTCGCAGGTGGCGCGGGTGATCGGCGTCTCCTGCAACCCGGCCACCTTCGCCC
GCGATGCGCGGACCCTGATCGACGCCGGCTTCAGGCTGGAGCGGGTCCTGCCGGTGGACCAGTTCCTCTGGTCCCCGCAC
ATAGAACTTGTGGGGGTGTTCCAGCGGTGA

Upstream 100 bases:

>100_bases
ATCTGGGCTTAAGTGCGGCGCCCGTCCAAGGAGCCCCCAAGGGAGACTCATGAGACCGCGTCCGCGCCGCCCCAACCCCA
AACCGCCGTCCGGCCCGCCG

Downstream 100 bases:

>100_bases
GCGGGGCCCATATTGGCGGCATGGTTCCCCTTTCCGTCCTCGACCTCTCGCCGATCCTGGAAGGCTCGGACGCCGCCCAG
TCGTTCCGCAACAGCCTGGA

Product: RNA methyltransferase, TrmA family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MELAIETMGGEGDGVAAGPIFVPFTLPGERVRVQGRGDRRELLEVLAASRERVEPPCPHFFACGGCALQHWAQAPYLAWK
ADRLRTTLARQHIETQILTPYATGPGTRRRVTLHARRGSRDAARLGYKARKSWDLVDIAVCPISEPAIQAAIPALKRLAA
PLFEHPKSAPSLHVTLSDTGLDIDITGVEAKSGGLSGDARMQLAERAAEADFARVTLAGEVAYMARSPQVRLGPAVVSLP
PGAFLQATRDAEAAMAEFVAGAAAGASRIADLYCGVGTFTFRLAEVAPVHAADFAAEAVQALTAALAGAPGLKGVTAEAR
DLVRRPVLAEELKKTDVAVFDPPRAGAAEQTAELARSQVARVIGVSCNPATFARDARTLIDAGFRLERVLPVDQFLWSPH
IELVGVFQR

Sequences:

>Translated_409_residues
MELAIETMGGEGDGVAAGPIFVPFTLPGERVRVQGRGDRRELLEVLAASRERVEPPCPHFFACGGCALQHWAQAPYLAWK
ADRLRTTLARQHIETQILTPYATGPGTRRRVTLHARRGSRDAARLGYKARKSWDLVDIAVCPISEPAIQAAIPALKRLAA
PLFEHPKSAPSLHVTLSDTGLDIDITGVEAKSGGLSGDARMQLAERAAEADFARVTLAGEVAYMARSPQVRLGPAVVSLP
PGAFLQATRDAEAAMAEFVAGAAAGASRIADLYCGVGTFTFRLAEVAPVHAADFAAEAVQALTAALAGAPGLKGVTAEAR
DLVRRPVLAEELKKTDVAVFDPPRAGAAEQTAELARSQVARVIGVSCNPATFARDARTLIDAGFRLERVLPVDQFLWSPH
IELVGVFQR
>Mature_409_residues
MELAIETMGGEGDGVAAGPIFVPFTLPGERVRVQGRGDRRELLEVLAASRERVEPPCPHFFACGGCALQHWAQAPYLAWK
ADRLRTTLARQHIETQILTPYATGPGTRRRVTLHARRGSRDAARLGYKARKSWDLVDIAVCPISEPAIQAAIPALKRLAA
PLFEHPKSAPSLHVTLSDTGLDIDITGVEAKSGGLSGDARMQLAERAAEADFARVTLAGEVAYMARSPQVRLGPAVVSLP
PGAFLQATRDAEAAMAEFVAGAAAGASRIADLYCGVGTFTFRLAEVAPVHAADFAAEAVQALTAALAGAPGLKGVTAEAR
DLVRRPVLAEELKKTDVAVFDPPRAGAAEQTAELARSQVARVIGVSCNPATFARDARTLIDAGFRLERVLPVDQFLWSPH
IELVGVFQR

Specific function: Could Be A 23s rRNA (Uracil-5-)-Methyltransferase. [C]

COG id: COG2265

COG function: function code J; SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TRAM domain [H]

Homologues:

Organism=Escherichia coli, GI1789148, Length=442, Percent_Identity=27.3755656108597, Blast_Score=119, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016027
- InterPro:   IPR002792
- InterPro:   IPR010280 [H]

Pfam domain/function: PF05958 tRNA_U5-meth_tr [H]

EC number: NA

Molecular weight: Translated: 43525; Mature: 43525

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELAIETMGGEGDGVAAGPIFVPFTLPGERVRVQGRGDRRELLEVLAASRERVEPPCPHF
CCEEEEECCCCCCCEEECCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCC
FACGGCALQHWAQAPYLAWKADRLRTTLARQHIETQILTPYATGPGTRRRVTLHARRGSR
EECCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEEECCCCC
DAARLGYKARKSWDLVDIAVCPISEPAIQAAIPALKRLAAPLFEHPKSAPSLHVTLSDTG
HHHHHCHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
LDIDITGVEAKSGGLSGDARMQLAERAAEADFARVTLAGEVAYMARSPQVRLGPAVVSLP
CEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCEEEHHCCCCEEECCEEEECC
PGAFLQATRDAEAAMAEFVAGAAAGASRIADLYCGVGTFTFRLAEVAPVHAADFAAEAVQ
CCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHH
ALTAALAGAPGLKGVTAEARDLVRRPVLAEELKKTDVAVFDPPRAGAAEQTAELARSQVA
HHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHH
RVIGVSCNPATFARDARTLIDAGFRLERVLPVDQFLWSPHIELVGVFQR
HHHCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHCCCEEEEEEECC
>Mature Secondary Structure
MELAIETMGGEGDGVAAGPIFVPFTLPGERVRVQGRGDRRELLEVLAASRERVEPPCPHF
CCEEEEECCCCCCCEEECCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCC
FACGGCALQHWAQAPYLAWKADRLRTTLARQHIETQILTPYATGPGTRRRVTLHARRGSR
EECCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEEECCCCC
DAARLGYKARKSWDLVDIAVCPISEPAIQAAIPALKRLAAPLFEHPKSAPSLHVTLSDTG
HHHHHCHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
LDIDITGVEAKSGGLSGDARMQLAERAAEADFARVTLAGEVAYMARSPQVRLGPAVVSLP
CEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCEEEHHCCCCEEECCEEEECC
PGAFLQATRDAEAAMAEFVAGAAAGASRIADLYCGVGTFTFRLAEVAPVHAADFAAEAVQ
CCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHH
ALTAALAGAPGLKGVTAEARDLVRRPVLAEELKKTDVAVFDPPRAGAAEQTAELARSQVA
HHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHH
RVIGVSCNPATFARDARTLIDAGFRLERVLPVDQFLWSPHIELVGVFQR
HHHCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]