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The map label for this gene is ygiD [H]

Identifier: 197104630

GI number: 197104630

Start: 1337779

End: 1338579

Strand: Reverse

Name: ygiD [H]

Synonym: PHZ_c1164

Alternate gene names: 197104630

Gene position: 1338579-1337779 (Counterclockwise)

Preceding gene: 197104631

Following gene: 197104626

Centisome position: 33.5

GC content: 73.03

Gene sequence:

>801_bases
ATGCGCCTCCCCACCCTCTTCATCCCGCACGGCGCGGGTCCCTGCTTCTTCATGGAGTGGACCCGCGGCCCCGCCGACGC
CTGGGCCCGCACGGAGACCTTCCTGCGCGGCCTGGTCGCCGGCCTGCCCGAGCGACCGAAGGCGATCCTGGTCGTCTCCG
GGCACTGGGAGGCGCCCGTCTTCACCGTCGGCTCGGGCGAGCGTCCCGGGCTGATCTTCGACTACTACGGCTTTCCCGAG
CACACCTACCGGCTGACCTTCGACGCCCCCGGCTCGCCCGCGCTGGCCGAGCGGGTGCGGGGGCTGCTGACGGGAGCCGG
CATCACCTCGGCGGCAGACCGGGCCCGCGGCTGGGATCACGGCGTGTTCGTGCCCCTCAAGCTCGTGACGCCGCAGGCCG
ATATCCCCGTCGTCCAGCTGTCGCTGAAGGCAGGGCTGGATCCCGAGGAGCATCTGGCCGCCGGCCGGGCGCTGGCGCCC
CTGCGCGACGAGGGGGTGCTGATCCTCGGCTCGGGGATGAGCTGGCACAACATGCGCGGCTTCTCGCCGGCCTACACCGC
CGCCTCGGCCGAGTTCGACGCCTGGCTGGCGAAGGCGACCGGGAATCCGGCCAGCCTGGCCCGCTGGGCCGAGGCGCCCA
ACGGCCGCCTCGCGCACCCGCAGGAGGAACACCTGATCCCGCTGATGGTCTGCGCCGGCGCTGCGGAGGGCGAGCCTGCG
CGCGCCGTGTTCCGCGACACCGTCATGGACGTGGTGATCTCGGCCTTCGAATTCGGCGAACCCCAGATGGCGGCCGCCTG
A

Upstream 100 bases:

>100_bases
GGCCGAGTTCCTCAAGACCTTCGGCGCCGCCTTCGCCGCCTGGATCGAGAAGATCCTGGCCGAGCCGGCGGCCGCCCGGG
CCGCCGCCTAGGGCCACGCC

Downstream 100 bases:

>100_bases
GCCGCTAGGCGGCCGCCGAGCGCGCCGCCTCGGACCGCTCCAGCGCCGCCTGCAGGGCCTCGTAGAGGCGCGCGGCTTCG
ATCGGCTTGGCGACGTAGCC

Product: extradiol ring-cleavage dioxygenase, class III enzyme, subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MRLPTLFIPHGAGPCFFMEWTRGPADAWARTETFLRGLVAGLPERPKAILVVSGHWEAPVFTVGSGERPGLIFDYYGFPE
HTYRLTFDAPGSPALAERVRGLLTGAGITSAADRARGWDHGVFVPLKLVTPQADIPVVQLSLKAGLDPEEHLAAGRALAP
LRDEGVLILGSGMSWHNMRGFSPAYTAASAEFDAWLAKATGNPASLARWAEAPNGRLAHPQEEHLIPLMVCAGAAEGEPA
RAVFRDTVMDVVISAFEFGEPQMAAA

Sequences:

>Translated_266_residues
MRLPTLFIPHGAGPCFFMEWTRGPADAWARTETFLRGLVAGLPERPKAILVVSGHWEAPVFTVGSGERPGLIFDYYGFPE
HTYRLTFDAPGSPALAERVRGLLTGAGITSAADRARGWDHGVFVPLKLVTPQADIPVVQLSLKAGLDPEEHLAAGRALAP
LRDEGVLILGSGMSWHNMRGFSPAYTAASAEFDAWLAKATGNPASLARWAEAPNGRLAHPQEEHLIPLMVCAGAAEGEPA
RAVFRDTVMDVVISAFEFGEPQMAAA
>Mature_266_residues
MRLPTLFIPHGAGPCFFMEWTRGPADAWARTETFLRGLVAGLPERPKAILVVSGHWEAPVFTVGSGERPGLIFDYYGFPE
HTYRLTFDAPGSPALAERVRGLLTGAGITSAADRARGWDHGVFVPLKLVTPQADIPVVQLSLKAGLDPEEHLAAGRALAP
LRDEGVLILGSGMSWHNMRGFSPAYTAASAEFDAWLAKATGNPASLARWAEAPNGRLAHPQEEHLIPLMVCAGAAEGEPA
RAVFRDTVMDVVISAFEFGEPQMAAA

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=255, Percent_Identity=36.8627450980392, Blast_Score=120, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 28519; Mature: 28519

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLPTLFIPHGAGPCFFMEWTRGPADAWARTETFLRGLVAGLPERPKAILVVSGHWEAPV
CCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCE
FTVGSGERPGLIFDYYGFPEHTYRLTFDAPGSPALAERVRGLLTGAGITSAADRARGWDH
EEECCCCCCCEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCC
GVFVPLKLVTPQADIPVVQLSLKAGLDPEEHLAAGRALAPLRDEGVLILGSGMSWHNMRG
CEEEEEEEECCCCCCCEEEEEECCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCC
FSPAYTAASAEFDAWLAKATGNPASLARWAEAPNGRLAHPQEEHLIPLMVCAGAAEGEPA
CCHHHHHCCCHHHHEEEECCCCHHHHHHHHCCCCCCCCCCCHHCEEEEEEECCCCCCCHH
RAVFRDTVMDVVISAFEFGEPQMAAA
HHHHHHHHHHHHHHHHHCCCCHHCCC
>Mature Secondary Structure
MRLPTLFIPHGAGPCFFMEWTRGPADAWARTETFLRGLVAGLPERPKAILVVSGHWEAPV
CCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCE
FTVGSGERPGLIFDYYGFPEHTYRLTFDAPGSPALAERVRGLLTGAGITSAADRARGWDH
EEECCCCCCCEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCC
GVFVPLKLVTPQADIPVVQLSLKAGLDPEEHLAAGRALAPLRDEGVLILGSGMSWHNMRG
CEEEEEEEECCCCCCCEEEEEECCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCC
FSPAYTAASAEFDAWLAKATGNPASLARWAEAPNGRLAHPQEEHLIPLMVCAGAAEGEPA
CCHHHHHCCCHHHHEEEECCCCHHHHHHHHCCCCCCCCCCCHHCEEEEEEECCCCCCCHH
RAVFRDTVMDVVISAFEFGEPQMAAA
HHHHHHHHHHHHHHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]