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The map label for this gene is sodB [H]

Identifier: 197104558

GI number: 197104558

Start: 1238778

End: 1239410

Strand: Reverse

Name: sodB [H]

Synonym: PHZ_c1092

Alternate gene names: 197104558

Gene position: 1239410-1238778 (Counterclockwise)

Preceding gene: 197104561

Following gene: 197104556

Centisome position: 31.01

GC content: 67.93

Gene sequence:

>633_bases
ATGTATATTCTGCCAGACCTTCCGTACGCCCATGACGCGCTCGAGCCGGCCGTCTCTGCCGACACCCTGCGGACCCACCA
CGGCAAGCACCACAAGGCCTACGTCGACAAGACGAACGAGATGGCCCCCAAGGCCGGCCTCGACGGCCGTCCGATGGAGG
ACGTGGTCCGGGAGTCCCGGCGCATGGGCGAGCAGAAGCTGTTCAACAACGCCGGCCAGGCCTGGAACCACGCCTTCTTC
TGGCAGTGCATGACCCCGAACGCCCGCCCGCCGTCCGGCGATCTGGCGCAGGCCATCGACAAGGCCTTCGGCGGTCTCGA
CAAGCTGAAGGAGGTGTTCGTCGCCGAGGGCGTGAACCACTTCGCCTCGGGGTGGGCCTGGCTGGTCGCCGGCGCCGACG
GCCTGAAGGTGACCTCCTTCCACGACGCCGACTGCCCGCTGGTCCACGAGGGCGCCTTCCCGCTCCTCGTCTGCGACGTG
TGGGAGCACGCCTACTACCTGGACTACAAGAACGACCGGAAGGGCTTCCTGGAGCGCTGGTTCGACGAGGTCGTGAACTG
GGAGTTCGTCGAGCGCCAGTACGCCGCGGCCCAGGGCCAGGGCGAAGGCTACCGCTACCCCGCGCCGACCTAG

Upstream 100 bases:

>100_bases
GCACGGAATTCTCGCCGACGGGTTCGGAACGGCGCCCGGCTTGACTATGTTTGGAAGGCGACTGGCGCGTCTCGCGCCGC
CTCCCCAGGGAAATGCCGAT

Downstream 100 bases:

>100_bases
CGCGCGGCGCTCAGGTCGAAGAGTCCCAGGTCCACCTGCTCGTCCACGTTCTGCGAGACGAGCACCCGCCCGCCGGGCGC
CAGGCCGATCTCCCCCGTTC

Product: superoxide dismutase (fe)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MYILPDLPYAHDALEPAVSADTLRTHHGKHHKAYVDKTNEMAPKAGLDGRPMEDVVRESRRMGEQKLFNNAGQAWNHAFF
WQCMTPNARPPSGDLAQAIDKAFGGLDKLKEVFVAEGVNHFASGWAWLVAGADGLKVTSFHDADCPLVHEGAFPLLVCDV
WEHAYYLDYKNDRKGFLERWFDEVVNWEFVERQYAAAQGQGEGYRYPAPT

Sequences:

>Translated_210_residues
MYILPDLPYAHDALEPAVSADTLRTHHGKHHKAYVDKTNEMAPKAGLDGRPMEDVVRESRRMGEQKLFNNAGQAWNHAFF
WQCMTPNARPPSGDLAQAIDKAFGGLDKLKEVFVAEGVNHFASGWAWLVAGADGLKVTSFHDADCPLVHEGAFPLLVCDV
WEHAYYLDYKNDRKGFLERWFDEVVNWEFVERQYAAAQGQGEGYRYPAPT
>Mature_210_residues
MYILPDLPYAHDALEPAVSADTLRTHHGKHHKAYVDKTNEMAPKAGLDGRPMEDVVRESRRMGEQKLFNNAGQAWNHAFF
WQCMTPNARPPSGDLAQAIDKAFGGLDKLKEVFVAEGVNHFASGWAWLVAGADGLKVTSFHDADCPLVHEGAFPLLVCDV
WEHAYYLDYKNDRKGFLERWFDEVVNWEFVERQYAAAQGQGEGYRYPAPT

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=198, Percent_Identity=38.8888888888889, Blast_Score=126, Evalue=1e-29,
Organism=Homo sapiens, GI67782305, Length=198, Percent_Identity=38.8888888888889, Blast_Score=126, Evalue=1e-29,
Organism=Homo sapiens, GI67782309, Length=197, Percent_Identity=34.010152284264, Blast_Score=100, Evalue=2e-21,
Organism=Escherichia coli, GI1787946, Length=195, Percent_Identity=46.6666666666667, Blast_Score=185, Evalue=2e-48,
Organism=Escherichia coli, GI1790342, Length=208, Percent_Identity=38.4615384615385, Blast_Score=140, Evalue=4e-35,
Organism=Caenorhabditis elegans, GI17506561, Length=197, Percent_Identity=37.0558375634518, Blast_Score=121, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17569479, Length=199, Percent_Identity=33.6683417085427, Blast_Score=110, Evalue=4e-25,
Organism=Saccharomyces cerevisiae, GI6321796, Length=208, Percent_Identity=31.25, Blast_Score=102, Evalue=5e-23,
Organism=Drosophila melanogaster, GI17136812, Length=202, Percent_Identity=33.1683168316832, Blast_Score=117, Evalue=4e-27,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23726; Mature: 23726

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYILPDLPYAHDALEPAVSADTLRTHHGKHHKAYVDKTNEMAPKAGLDGRPMEDVVRESR
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
RMGEQKLFNNAGQAWNHAFFWQCMTPNARPPSGDLAQAIDKAFGGLDKLKEVFVAEGVNH
HHHHHHHHHHCCHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
FASGWAWLVAGADGLKVTSFHDADCPLVHEGAFPLLVCDVWEHAYYLDYKNDRKGFLERW
HHCCEEEEEECCCCCEEEEECCCCCCEEECCCCCEEHHHHHHHHEEECCCCCHHHHHHHH
FDEVVNWEFVERQYAAAQGQGEGYRYPAPT
HHHHHCHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MYILPDLPYAHDALEPAVSADTLRTHHGKHHKAYVDKTNEMAPKAGLDGRPMEDVVRESR
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
RMGEQKLFNNAGQAWNHAFFWQCMTPNARPPSGDLAQAIDKAFGGLDKLKEVFVAEGVNH
HHHHHHHHHHCCHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
FASGWAWLVAGADGLKVTSFHDADCPLVHEGAFPLLVCDVWEHAYYLDYKNDRKGFLERW
HHCCEEEEEECCCCCEEEEECCCCCCEEECCCCCEEHHHHHHHHEEECCCCCHHHHHHHH
FDEVVNWEFVERQYAAAQGQGEGYRYPAPT
HHHHHCHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2243797; 1500190; 12704232 [H]