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The map label for this gene is ycjD [H]

Identifier: 197104530

GI number: 197104530

Start: 1200158

End: 1200568

Strand: Reverse

Name: ycjD [H]

Synonym: PHZ_c1064

Alternate gene names: 197104530

Gene position: 1200568-1200158 (Counterclockwise)

Preceding gene: 197104531

Following gene: 197104527

Centisome position: 30.04

GC content: 72.75

Gene sequence:

>411_bases
ATGAGAGTCACCAGCAACGTCCGACAGCGCGCCCGCCGCCTGCGCAAGCGCATGTCGCTTCCGGAGGTGATGCTCTGGCG
CTGCCTGCGCGGCCGCGAACCGGGCAAGCCGGTCTTCCGCCGCCAGCACGCGCTCGGTCCCTATGTGCTGGACTTCTACT
GTCCGTCCGCACGGCTGTGCGTGGAACTCGACGGCGGGGCGCATGGCTTCGGCGACCGGCCCGCCGCCGACGCCCGCCGC
GATGGGCGCCTTCGCTCGCTCGGCGTCTCCACCCTGCGGCTCAGCGCGTCCGAGGTGATCTCCTCGCCCCAGGTCATCGC
CGACGCCCTGCTCGACCTCGCCCGGCGACGCGCCAGCGCCCCCTCCACCCCTTCGGGGTCCCCCTCCCCCATGAATGGGG
GAGGTTCCTGA

Upstream 100 bases:

>100_bases
TTCAAGGCCCTCGGCCTCATGTGAGGACTGACGCCAAAATACCTCCCCCGCCCGCGGGGGAGGGGGACCGCGAAGCGGTG
GAGGGGGCGCTGCCCGCACC

Downstream 100 bases:

>100_bases
ACGCGCTCCGACCAACCTCCCCCGCCCGCGGGGGAGGGGGCGCTACCCCGGTCCGTTGTTCCGGAACGCCCGCCAGAGCT
GCCAGACGCCGTAGAAGACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MRVTSNVRQRARRLRKRMSLPEVMLWRCLRGREPGKPVFRRQHALGPYVLDFYCPSARLCVELDGGAHGFGDRPAADARR
DGRLRSLGVSTLRLSASEVISSPQVIADALLDLARRRASAPSTPSGSPSPMNGGGS

Sequences:

>Translated_136_residues
MRVTSNVRQRARRLRKRMSLPEVMLWRCLRGREPGKPVFRRQHALGPYVLDFYCPSARLCVELDGGAHGFGDRPAADARR
DGRLRSLGVSTLRLSASEVISSPQVIADALLDLARRRASAPSTPSGSPSPMNGGGS
>Mature_136_residues
MRVTSNVRQRARRLRKRMSLPEVMLWRCLRGREPGKPVFRRQHALGPYVLDFYCPSARLCVELDGGAHGFGDRPAADARR
DGRLRSLGVSTLRLSASEVISSPQVIADALLDLARRRASAPSTPSGSPSPMNGGGS

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=119, Percent_Identity=39.4957983193277, Blast_Score=91, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 14867; Mature: 14867

Theoretical pI: Translated: 11.99; Mature: 11.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVTSNVRQRARRLRKRMSLPEVMLWRCLRGREPGKPVFRRQHALGPYVLDFYCPSARLC
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEEEECCCCEEE
VELDGGAHGFGDRPAADARRDGRLRSLGVSTLRLSASEVISSPQVIADALLDLARRRASA
EEECCCCCCCCCCCCCCHHHCCCHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
PSTPSGSPSPMNGGGS
CCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRVTSNVRQRARRLRKRMSLPEVMLWRCLRGREPGKPVFRRQHALGPYVLDFYCPSARLC
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEEEECCCCEEE
VELDGGAHGFGDRPAADARRDGRLRSLGVSTLRLSASEVISSPQVIADALLDLARRRASA
EEECCCCCCCCCCCCCCHHHCCCHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
PSTPSGSPSPMNGGGS
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]