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The map label for this gene is radC [C]

Identifier: 197104531

GI number: 197104531

Start: 1200645

End: 1201376

Strand: Reverse

Name: radC [C]

Synonym: PHZ_c1065

Alternate gene names: 197104531

Gene position: 1201376-1200645 (Counterclockwise)

Preceding gene: 197104532

Following gene: 197104530

Centisome position: 30.06

GC content: 72.4

Gene sequence:

>732_bases
ATGCGCGGTCTGGCCGGCATAGAGGACGCCTCCGGCGCGCCCGATCTCTTCGCGGCGCCGGCGCCCCATTTCGCGGGCCA
TCGCGAGCGGCTGCGCCGCCGCGCGGTCGCCGGCGGGCTCGCCGCCCTGCCCGACTACGAGCTGCTCGAGCTCTTCCTCT
TCCGCTCCATCCCCAAGAAGGACGTCAAGCCGCTGGCCAAGCAGCTGCTGGCCCGCTTCGGCTCGCTGGGCGCCGTGCTC
GGCGCCACGGCCGCCGAGCTGCGCACCGTCCCCGGCGTCGGCGAGAGCGTGGCCCTCGACCTCAAGCTGCTGCACGAGGC
GACCCTGCGCACGGCGAAGGAGCAGGTGGGCCGCCGGCCGGTGATCTCGTCCTGGTCCGCCCTGCTGGCCTATGTGAAGA
CCGCCCTCGCCCACGAGAGCCGCGAGCAGTTCCGCGTCCTGTTCCTCGACAAGAAGAACCAGCTCCTCGCCGACGAGGTG
ATGAACCACGGCACCGTCGACCACGCCCCGGTCTACCCGCGCGAGGTCGTCCGCCGCGCCCTCGAACTGTCGGCCAGCGC
CCTCATTCTGGTGCACAACCATCCCTCGGGCGATCCCACCCCCTCCTCCGCCGACGTCGACATGACCCGCCAGGTCGTCG
ACGCGGCCCGCGCCCTGCGCATCGCCGTCCACGACCACCTCGTCGTCGGTCGCGACGGCGTCGCCAGCTTCAAGGCCCTC
GGCCTCATGTGA

Upstream 100 bases:

>100_bases
GCGACAGCACCCCGCCCGGCGCCTACACCGGCACCTTCAACGTGACCGTCGCCTACAACTAGGCTTGCCAAGCCGGAACG
CATGGGGAACATTGTTCCTC

Downstream 100 bases:

>100_bases
GGACTGACGCCAAAATACCTCCCCCGCCCGCGGGGGAGGGGGACCGCGAAGCGGTGGAGGGGGCGCTGCCCGCACCATGA
GAGTCACCAGCAACGTCCGA

Product: DNA repair protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MRGLAGIEDASGAPDLFAAPAPHFAGHRERLRRRAVAGGLAALPDYELLELFLFRSIPKKDVKPLAKQLLARFGSLGAVL
GATAAELRTVPGVGESVALDLKLLHEATLRTAKEQVGRRPVISSWSALLAYVKTALAHESREQFRVLFLDKKNQLLADEV
MNHGTVDHAPVYPREVVRRALELSASALILVHNHPSGDPTPSSADVDMTRQVVDAARALRIAVHDHLVVGRDGVASFKAL
GLM

Sequences:

>Translated_243_residues
MRGLAGIEDASGAPDLFAAPAPHFAGHRERLRRRAVAGGLAALPDYELLELFLFRSIPKKDVKPLAKQLLARFGSLGAVL
GATAAELRTVPGVGESVALDLKLLHEATLRTAKEQVGRRPVISSWSALLAYVKTALAHESREQFRVLFLDKKNQLLADEV
MNHGTVDHAPVYPREVVRRALELSASALILVHNHPSGDPTPSSADVDMTRQVVDAARALRIAVHDHLVVGRDGVASFKAL
GLM
>Mature_243_residues
MRGLAGIEDASGAPDLFAAPAPHFAGHRERLRRRAVAGGLAALPDYELLELFLFRSIPKKDVKPLAKQLLARFGSLGAVL
GATAAELRTVPGVGESVALDLKLLHEATLRTAKEQVGRRPVISSWSALLAYVKTALAHESREQFRVLFLDKKNQLLADEV
MNHGTVDHAPVYPREVVRRALELSASALILVHNHPSGDPTPSSADVDMTRQVVDAARALRIAVHDHLVVGRDGVASFKAL
GLM

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=212, Percent_Identity=35.377358490566, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI2367100, Length=122, Percent_Identity=45.0819672131148, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1788997, Length=122, Percent_Identity=44.2622950819672, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1788312, Length=104, Percent_Identity=49.0384615384615, Blast_Score=103, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 26228; Mature: 26228

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGLAGIEDASGAPDLFAAPAPHFAGHRERLRRRAVAGGLAALPDYELLELFLFRSIPKK
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHCCCHH
DVKPLAKQLLARFGSLGAVLGATAAELRTVPGVGESVALDLKLLHEATLRTAKEQVGRRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
VISSWSALLAYVKTALAHESREQFRVLFLDKKNQLLADEVMNHGTVDHAPVYPREVVRRA
HHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHH
LELSASALILVHNHPSGDPTPSSADVDMTRQVVDAARALRIAVHDHLVVGRDGVASFKAL
HHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHH
GLM
CCC
>Mature Secondary Structure
MRGLAGIEDASGAPDLFAAPAPHFAGHRERLRRRAVAGGLAALPDYELLELFLFRSIPKK
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHCCCHH
DVKPLAKQLLARFGSLGAVLGATAAELRTVPGVGESVALDLKLLHEATLRTAKEQVGRRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
VISSWSALLAYVKTALAHESREQFRVLFLDKKNQLLADEVMNHGTVDHAPVYPREVVRRA
HHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHH
LELSASALILVHNHPSGDPTPSSADVDMTRQVVDAARALRIAVHDHLVVGRDGVASFKAL
HHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHH
GLM
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA