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The map label for this gene is 197104470

Identifier: 197104470

GI number: 197104470

Start: 1113061

End: 1114287

Strand: Reverse

Name: 197104470

Synonym: PHZ_c1004

Alternate gene names: NA

Gene position: 1114287-1113061 (Counterclockwise)

Preceding gene: 197104471

Following gene: 197104469

Centisome position: 27.88

GC content: 77.18

Gene sequence:

>1227_bases
ATGGAGTCGTCCCGCGCCCGCCTCGCCCCCCACCGCGAACAGGTCCTGGACCTGGTCGGCCGGCCCGGCTCGCGCTGGCG
CATTCCGACGCCGGCCGCGGTGCTGGACCTCGACGCCTTCGAGGCCAATGTCGCGCTCATGGCCGGGCGGGCCCGCGCGG
CGGGCCTGGCGCTGCGGCCGCACGCCAAGTCCCACAAGTGCGGCTGGGTCGCGGCCCGGCAGGTGGCGGCCGGGGCGGCC
GGAATCTGCTGCGCCAAGCTGGCCGAGGCCGAGGCGATGGCGGACGCCGGGATCGCCTCCATCCTCGTCACCTCGCCCAT
CGCCGGCGAGGCGCCCGCCCGCCGCGCCGCCGCCCTCGCGCGCCGGCTGGCCGACTTCCGCATCGTCGTGGACCATCCGG
ACGGCGTCGCCGAGCTGGCCGCGGCGTGCGCCGACGCCGGCGCCGACGCCGACTCCGCCGACGCCGACGCCGACGCCGAC
GAGGGCGGCGCCGGGAAGCCCGGGGCCGGAACGCCGCTCCAGGTGCTGATCGACGTCGACGTGGGCCTCGGCCGCACCGG
CGTCCCCGCGCCCGCCCAGGCCCTGGAGGTCGCCCGCGCCGTCGCCGCCGCGCCCGGCCTGCGCCTGATCGGGCTGCAGG
GCTACGGCGGCCACTGGCAGCACGTGAAGGGCGCCGGCGCGCGGGCCATGGCCGTGGCCGAGGGCATGGAGCGCCTGCAG
GCCGTGCGCCGCGCCCTGGAGGAGGCCGGGTTCCCGATCGACGTGGTCACCGGCGGCGGCACCGGCACCTTCGCCACCGA
CGCGGCCCTGGGCGTGCTGACCGAGGTCCAGCCCGGTTCGTACGCCTTCATGGACCGCGAGTACCGCGAGGCCCTGGGCG
AGGACCCCGACGGCGCCTTCGCCCAGAGCCTGTCGGTCGCCGCCACCGTCATCAGCGCCAACCATCCGAAGTGGGTGACG
GTGGACGCGGGCCTGAAGGCCTTCGCCACCGACGGCCCCCTGCCCCAGCCGCTGACGGCGAAGTTCGCCGGCTGCGACTA
CCGCTTCTTCGGCGACGAGCACGGCATGCTGATGCGGCCCGAGGCGCCGGTGGCGCGCGGCGAGCGGGTGGAGCTGGCGC
CCGGCCACATCGACCCCACCCTGGACCGCTACGACGTCCTCCATCTCGTGCGCGGCGAGGTGCTGGAGGCGGTGGTCCCC
ATCGAAGCGCGCGGAGCGTCCCAGTGA

Upstream 100 bases:

>100_bases
ACCACCCACTGCAGTGGATGGGTCCAGCCCGGCCCGGCCGAGACCGGACGCCCTCGCCCCCCTCCTCCCCGCCGGCGGTT
CTCGCGCTAAGCTGCGGGGG

Downstream 100 bases:

>100_bases
GCGATCCCGAACGTCCCGCCCCCGACCGGCAGGCCCTCGACCGGCAGGCGCTGGTCCGCGCCGCCGCCCACGAGGTGCTG
CTGCGCCGGATGATCCGCGA

Product: threonine aldolase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MESSRARLAPHREQVLDLVGRPGSRWRIPTPAAVLDLDAFEANVALMAGRARAAGLALRPHAKSHKCGWVAARQVAAGAA
GICCAKLAEAEAMADAGIASILVTSPIAGEAPARRAAALARRLADFRIVVDHPDGVAELAAACADAGADADSADADADAD
EGGAGKPGAGTPLQVLIDVDVGLGRTGVPAPAQALEVARAVAAAPGLRLIGLQGYGGHWQHVKGAGARAMAVAEGMERLQ
AVRRALEEAGFPIDVVTGGGTGTFATDAALGVLTEVQPGSYAFMDREYREALGEDPDGAFAQSLSVAATVISANHPKWVT
VDAGLKAFATDGPLPQPLTAKFAGCDYRFFGDEHGMLMRPEAPVARGERVELAPGHIDPTLDRYDVLHLVRGEVLEAVVP
IEARGASQ

Sequences:

>Translated_408_residues
MESSRARLAPHREQVLDLVGRPGSRWRIPTPAAVLDLDAFEANVALMAGRARAAGLALRPHAKSHKCGWVAARQVAAGAA
GICCAKLAEAEAMADAGIASILVTSPIAGEAPARRAAALARRLADFRIVVDHPDGVAELAAACADAGADADSADADADAD
EGGAGKPGAGTPLQVLIDVDVGLGRTGVPAPAQALEVARAVAAAPGLRLIGLQGYGGHWQHVKGAGARAMAVAEGMERLQ
AVRRALEEAGFPIDVVTGGGTGTFATDAALGVLTEVQPGSYAFMDREYREALGEDPDGAFAQSLSVAATVISANHPKWVT
VDAGLKAFATDGPLPQPLTAKFAGCDYRFFGDEHGMLMRPEAPVARGERVELAPGHIDPTLDRYDVLHLVRGEVLEAVVP
IEARGASQ
>Mature_408_residues
MESSRARLAPHREQVLDLVGRPGSRWRIPTPAAVLDLDAFEANVALMAGRARAAGLALRPHAKSHKCGWVAARQVAAGAA
GICCAKLAEAEAMADAGIASILVTSPIAGEAPARRAAALARRLADFRIVVDHPDGVAELAAACADAGADADSADADADAD
EGGAGKPGAGTPLQVLIDVDVGLGRTGVPAPAQALEVARAVAAAPGLRLIGLQGYGGHWQHVKGAGARAMAVAEGMERLQ
AVRRALEEAGFPIDVVTGGGTGTFATDAALGVLTEVQPGSYAFMDREYREALGEDPDGAFAQSLSVAATVISANHPKWVT
VDAGLKAFATDGPLPQPLTAKFAGCDYRFFGDEHGMLMRPEAPVARGERVELAPGHIDPTLDRYDVLHLVRGEVLEAVVP
IEARGASQ

Specific function: Catalyzes the reversible cleavage of D-theronine or D- allothreonine into glycine and acetaldehyde. Can also cleave D- beta-phenylserine, D-beta-hydroxy-alpha-aminovaleric acid, D-beta- 3,4-dihydroxyphenylserine and D-beta-3,4- methylenedioxyphenylserine

COG id: COG3616

COG function: function code E; Predicted amino acid aldolase or racemase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DSD1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: =4.1.2.42 [H]

Molecular weight: Translated: 42000; Mature: 42000

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESSRARLAPHREQVLDLVGRPGSRWRIPTPAAVLDLDAFEANVALMAGRARAAGLALRP
CCCCCCCCCCCHHHHHHHHCCCCCCEECCCCHHEEECHHHHCCEEEEECCCHHCCEEECC
HAKSHKCGWVAARQVAAGAAGICCAKLAEAEAMADAGIASILVTSPIAGEAPARRAAALA
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHEEECCCCCCCHHHHHHHHH
RRLADFRIVVDHPDGVAELAAACADAGADADSADADADADEGGAGKPGAGTPLQVLIDVD
HHHHHEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
VGLGRTGVPAPAQALEVARAVAAAPGLRLIGLQGYGGHWQHVKGAGARAMAVAEGMERLQ
CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
AVRRALEEAGFPIDVVTGGGTGTFATDAALGVLTEVQPGSYAFMDREYREALGEDPDGAF
HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHEECCCCCEEHHCHHHHHHCCCCCCCHH
AQSLSVAATVISANHPKWVTVDAGLKAFATDGPLPQPLTAKFAGCDYRFFGDEHGMLMRP
HHHHHHHHHEEECCCCCEEEECCCCEEEECCCCCCCCHHHHHCCCEEEEECCCCCEEECC
EAPVARGERVELAPGHIDPTLDRYDVLHLVRGEVLEAVVPIEARGASQ
CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MESSRARLAPHREQVLDLVGRPGSRWRIPTPAAVLDLDAFEANVALMAGRARAAGLALRP
CCCCCCCCCCCHHHHHHHHCCCCCCEECCCCHHEEECHHHHCCEEEEECCCHHCCEEECC
HAKSHKCGWVAARQVAAGAAGICCAKLAEAEAMADAGIASILVTSPIAGEAPARRAAALA
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHEEECCCCCCCHHHHHHHHH
RRLADFRIVVDHPDGVAELAAACADAGADADSADADADADEGGAGKPGAGTPLQVLIDVD
HHHHHEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
VGLGRTGVPAPAQALEVARAVAAAPGLRLIGLQGYGGHWQHVKGAGARAMAVAEGMERLQ
CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
AVRRALEEAGFPIDVVTGGGTGTFATDAALGVLTEVQPGSYAFMDREYREALGEDPDGAF
HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHEECCCCCEEHHCHHHHHHCCCCCCCHH
AQSLSVAATVISANHPKWVTVDAGLKAFATDGPLPQPLTAKFAGCDYRFFGDEHGMLMRP
HHHHHHHHHEEECCCCCEEEECCCCEEEECCCCCCCCHHHHHCCCEEEEECCCCCEEECC
EAPVARGERVELAPGHIDPTLDRYDVLHLVRGEVLEAVVPIEARGASQ
CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9642221 [H]