| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is 197104375
Identifier: 197104375
GI number: 197104375
Start: 1001852
End: 1003246
Strand: Reverse
Name: 197104375
Synonym: PHZ_c0909
Alternate gene names: NA
Gene position: 1003246-1001852 (Counterclockwise)
Preceding gene: 197104379
Following gene: 197104372
Centisome position: 25.1
GC content: 72.76
Gene sequence:
>1395_bases ATGTCCGTTTCCCGCCGCCGTTTCCTCGGCTTCGCCGCCACCTCCGTCGCCTTCGCGGGTCTGTCGCACGCCTTCGCCCA GGGAACGCCAGAGGCCTCCCGCGGCGAGGCCATCGGCTACGGCGACCTCGTCCCGGACCCGGCCGGCGTCTTCGACCTGC CCCCGGGCTTCTCCTACAAGGTGGTCTCCGAGTTCGGCCAGCCGATGGACGACGGACTGCTCACCCCCGGCCGCATGGAC GGCATGGGCGCCTTCCCGGCCGGCGAGGGCCGGGTCGCCCTGGTCCGCAACCACGAAGTCTATCCCGCCGACCTGGAGCG CTCGGCGTTCGGCCGCGACGGAGCGCTGGCGGGCCGCATCGATCCGGCCCGCGTCTTCGACCGCATCGGCGATCGGCCGT TCGCCGGCGGGACCACGACCCTCGTCTGGGACGTGCGCGAGGGCCGCCTCGTCTCGCACCACCTCAGCCTCGCCGGGACC ATGCTGAACTGCGCGGGCGGGGTCACGCCCGAGGGCTCCTGGCTCACCTGCGAAGAGACGGTCCAAAAAGCGGGCAGCCA GGGCGCGAAGGACCACGGCTGGGTGTTCGAGGTGCCGTCCGCCGCCCGCGTGCTCGTGGACCCGCAGCCGATCAAGGCGA TGGGCCGGTTCCGCCACGAGGCGACCGCCACCGATCCCCGCACCGGCGTCGTCTATCTCACCGAGGATATCGGCGACGGC CTGATCTACCGCTACCTGCCCAACGACCGCGCGCGCCTGCTGGCCGGCGGGCGGCTGCAGGCCCTGGGCTTCAAGGGCGG CGGCGATCCCCGCAACTGGGACGAGGCCTGGTGGGCGCAGGGCGACTGGCGCGAGGTCGTCTGGGTCGATGTCGACGAGG TCGAGAACCCGAACGACGACCTGCGCAAGCGCGGGCAGGAGAAGGGCGCGGCCCCATTCGCCCGAGGCGAGGGCCTGTTC TTCGGCGACGGCGAGCTGTTCGTCGCCTGCACCAGCGCGGGCCGCGAGAAGCTGGGCCACATCCTGCGCTACGTCCCGAG CCCGGCCGAGGGCCAGCCCGGCGAGGCCGACCGGCCGGGCCGCCTGCAGCTCTTCGTCGAGCCGCAGGACGCCTCGGTGA TGAGCATGGCCGACAACCTGGCCGTCGCGCCCTGGGGCCACCTGTTCGTCTGCGAGGACAAGGGGCTGGGCCGCAACCAG CTCAGGGCCGTCACGCCCGAGGGCCGGGTCTACACCTTCGGCCGCAACGCCAGGCCGCCGCGCCTGCCGCAGCCGGTGAA CACCGAACTGGCCGGGGTGTGCTTCTCGCCGGACGGCTCGACGCTGTTCGTGAACCTCTATTCGCCGGGGACGACCCTGG CGATCACCGGCCCCTGGAAGGACCTCAGGGCCTAG
Upstream 100 bases:
>100_bases GCCCGGTCCACCCGCTAAGGCAGGCGGGCGGCCGCGACTCCGTCATCAGGCTGCAATCCTGGGCGGATAGCCCGGCGACG TCAGGGGGTGCAATCCGATC
Downstream 100 bases:
>100_bases GTCGCGGGCCTCCGCCCCTGCAAGGTCAGGGCCTCGGCGCCCGTTCGAACCGGCGCATCGACCAGTACTTGTAGCCCTCG CTCTCCACGAGCCGCCAGCC
Product: hypothetical protein
Products: NA
Alternate protein names: WD40 Domain-Containing Protein Beta Propeller; Twin-Arginine Translocation Pathway Signal; Twin-Arginine Translocation Pathway Signal Protein; Phosphatase; Tat Pathway Signal Sequence Domain Protein; WD40 Domain-Containing Protein; LB Protein; WD40 Domain Protein Beta Propeller; DTDP-Glucose 4 6-Dehydratase; Signal Peptide
Number of amino acids: Translated: 464; Mature: 463
Protein sequence:
>464_residues MSVSRRRFLGFAATSVAFAGLSHAFAQGTPEASRGEAIGYGDLVPDPAGVFDLPPGFSYKVVSEFGQPMDDGLLTPGRMD GMGAFPAGEGRVALVRNHEVYPADLERSAFGRDGALAGRIDPARVFDRIGDRPFAGGTTTLVWDVREGRLVSHHLSLAGT MLNCAGGVTPEGSWLTCEETVQKAGSQGAKDHGWVFEVPSAARVLVDPQPIKAMGRFRHEATATDPRTGVVYLTEDIGDG LIYRYLPNDRARLLAGGRLQALGFKGGGDPRNWDEAWWAQGDWREVVWVDVDEVENPNDDLRKRGQEKGAAPFARGEGLF FGDGELFVACTSAGREKLGHILRYVPSPAEGQPGEADRPGRLQLFVEPQDASVMSMADNLAVAPWGHLFVCEDKGLGRNQ LRAVTPEGRVYTFGRNARPPRLPQPVNTELAGVCFSPDGSTLFVNLYSPGTTLAITGPWKDLRA
Sequences:
>Translated_464_residues MSVSRRRFLGFAATSVAFAGLSHAFAQGTPEASRGEAIGYGDLVPDPAGVFDLPPGFSYKVVSEFGQPMDDGLLTPGRMD GMGAFPAGEGRVALVRNHEVYPADLERSAFGRDGALAGRIDPARVFDRIGDRPFAGGTTTLVWDVREGRLVSHHLSLAGT MLNCAGGVTPEGSWLTCEETVQKAGSQGAKDHGWVFEVPSAARVLVDPQPIKAMGRFRHEATATDPRTGVVYLTEDIGDG LIYRYLPNDRARLLAGGRLQALGFKGGGDPRNWDEAWWAQGDWREVVWVDVDEVENPNDDLRKRGQEKGAAPFARGEGLF FGDGELFVACTSAGREKLGHILRYVPSPAEGQPGEADRPGRLQLFVEPQDASVMSMADNLAVAPWGHLFVCEDKGLGRNQ LRAVTPEGRVYTFGRNARPPRLPQPVNTELAGVCFSPDGSTLFVNLYSPGTTLAITGPWKDLRA >Mature_463_residues SVSRRRFLGFAATSVAFAGLSHAFAQGTPEASRGEAIGYGDLVPDPAGVFDLPPGFSYKVVSEFGQPMDDGLLTPGRMDG MGAFPAGEGRVALVRNHEVYPADLERSAFGRDGALAGRIDPARVFDRIGDRPFAGGTTTLVWDVREGRLVSHHLSLAGTM LNCAGGVTPEGSWLTCEETVQKAGSQGAKDHGWVFEVPSAARVLVDPQPIKAMGRFRHEATATDPRTGVVYLTEDIGDGL IYRYLPNDRARLLAGGRLQALGFKGGGDPRNWDEAWWAQGDWREVVWVDVDEVENPNDDLRKRGQEKGAAPFARGEGLFF GDGELFVACTSAGREKLGHILRYVPSPAEGQPGEADRPGRLQLFVEPQDASVMSMADNLAVAPWGHLFVCEDKGLGRNQL RAVTPEGRVYTFGRNARPPRLPQPVNTELAGVCFSPDGSTLFVNLYSPGTTLAITGPWKDLRA
Specific function: Unknown
COG id: COG3211
COG function: function code R; Predicted phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50062; Mature: 49931
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVSRRRFLGFAATSVAFAGLSHAFAQGTPEASRGEAIGYGDLVPDPAGVFDLPPGFSYK CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCEECCCCCCHH VVSEFGQPMDDGLLTPGRMDGMGAFPAGEGRVALVRNHEVYPADLERSAFGRDGALAGRI HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHCCCCCCEECCC DPARVFDRIGDRPFAGGTTTLVWDVREGRLVSHHLSLAGTMLNCAGGVTPEGSWLTCEET CHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEHHHHHHHHHHHHCCCCCCCCCEEEHHHH VQKAGSQGAKDHGWVFEVPSAARVLVDPQPIKAMGRFRHEATATDPRTGVVYLTEDIGDG HHHHCCCCCCCCCEEEECCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCC LIYRYLPNDRARLLAGGRLQALGFKGGGDPRNWDEAWWAQGDWREVVWVDVDEVENPNDD EEEEECCCCCEEEEECCEEEEEEECCCCCCCCCCHHHCCCCCCEEEEEEEHHHCCCCCHH LRKRGQEKGAAPFARGEGLFFGDGELFVACTSAGREKLGHILRYVPSPAEGQPGEADRPG HHHHHHHCCCCCCCCCCEEEEECCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCC RLQLFVEPQDASVMSMADNLAVAPWGHLFVCEDKGLGRNQLRAVTPEGRVYTFGRNARPP EEEEEECCCCCHHHHHHCCEEECCCCEEEEECCCCCCCCCEEEECCCCCEEECCCCCCCC RLPQPVNTELAGVCFSPDGSTLFVNLYSPGTTLAITGPWKDLRA CCCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCHHHHCC >Mature Secondary Structure SVSRRRFLGFAATSVAFAGLSHAFAQGTPEASRGEAIGYGDLVPDPAGVFDLPPGFSYK CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCEECCCCCCHH VVSEFGQPMDDGLLTPGRMDGMGAFPAGEGRVALVRNHEVYPADLERSAFGRDGALAGRI HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHCCCCCCEECCC DPARVFDRIGDRPFAGGTTTLVWDVREGRLVSHHLSLAGTMLNCAGGVTPEGSWLTCEET CHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEHHHHHHHHHHHHCCCCCCCCCEEEHHHH VQKAGSQGAKDHGWVFEVPSAARVLVDPQPIKAMGRFRHEATATDPRTGVVYLTEDIGDG HHHHCCCCCCCCCEEEECCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCC LIYRYLPNDRARLLAGGRLQALGFKGGGDPRNWDEAWWAQGDWREVVWVDVDEVENPNDD EEEEECCCCCEEEEECCEEEEEEECCCCCCCCCCHHHCCCCCCEEEEEEEHHHCCCCCHH LRKRGQEKGAAPFARGEGLFFGDGELFVACTSAGREKLGHILRYVPSPAEGQPGEADRPG HHHHHHHCCCCCCCCCCEEEEECCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCC RLQLFVEPQDASVMSMADNLAVAPWGHLFVCEDKGLGRNQLRAVTPEGRVYTFGRNARPP EEEEEECCCCCHHHHHHCCEEECCCCEEEEECCCCCCCCCEEEECCCCCEEECCCCCCCC RLPQPVNTELAGVCFSPDGSTLFVNLYSPGTTLAITGPWKDLRA CCCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA