Click here to switch to the map view.

The map label for this gene is tnpR [C]

Identifier: 197104371

GI number: 197104371

Start: 998979

End: 999500

Strand: Reverse

Name: tnpR [C]

Synonym: PHZ_c0905

Alternate gene names: 197104371

Gene position: 999500-998979 (Counterclockwise)

Preceding gene: 197104372

Following gene: 197104370

Centisome position: 25.01

GC content: 73.56

Gene sequence:

>522_bases
ATGCTCAAGATCGGCTACGCGCGACTGGGCGACGAGCAGCTGGGCGACGAGCATCTCGAGCAGCAGCTCGCCGAGCTCGA
GAGGCTCGGCTGCCAGGTCATCCGCACCGAGGAGGCCTATGTCGACGGGGCTCCGGCGCCGGTGCTCGCCGCCATCCTCG
ACTTCATCGCCGAGGGCGACCAGCTCATCGTCACCCGCCTCGAACACCTGGCGACCACCAGCCGCCAGTTGCTCGACGTC
GTCGCACGCCTCCAGGCGCGCGGCGCGAGCCTCTACGTGTCGGACGCCGACCTCAGCACCGAGGGCGACGGCGGCCGCGC
CCTGCGCGCCGTCCTCGAGGCGGTTGGACAGCTGGAGCCGACCAACGGCGCGCGCCGCCGCCGATCGGGCGCCGAGGCCC
ACGAGATCCGCGCCCTGCGGCGCGCCGGCGTGGGCCCGGTGGAGATCGCCCGGCGCCTGGGCGTTTCGCGCATGACCGTC
TGGCGCAAGCTGCGCGAGATGGAGTCCGAGGCGCGGGCCTAG

Upstream 100 bases:

>100_bases
GATTGTTGCTGAGATTTAACGTCGCAACGGGTTCACTCCGGCCGCGGCTTCTGGGAATCTTCCACCTTCGGTGCAGGAGT
CTCGGGGAGCTTCGTCGGGG

Downstream 100 bases:

>100_bases
AGGCCGGCGCGACGCTGGACATCGCGGACCCGCGGCCCCATCCTTCGCGTTCAAACGATTGTTCGCCTTGAGGGCCCGCC
CCCGATGTTCATGCGCTTCT

Product: site-specific recombinase, DNA invertase Pin-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MLKIGYARLGDEQLGDEHLEQQLAELERLGCQVIRTEEAYVDGAPAPVLAAILDFIAEGDQLIVTRLEHLATTSRQLLDV
VARLQARGASLYVSDADLSTEGDGGRALRAVLEAVGQLEPTNGARRRRSGAEAHEIRALRRAGVGPVEIARRLGVSRMTV
WRKLREMESEARA

Sequences:

>Translated_173_residues
MLKIGYARLGDEQLGDEHLEQQLAELERLGCQVIRTEEAYVDGAPAPVLAAILDFIAEGDQLIVTRLEHLATTSRQLLDV
VARLQARGASLYVSDADLSTEGDGGRALRAVLEAVGQLEPTNGARRRRSGAEAHEIRALRRAGVGPVEIARRLGVSRMTV
WRKLREMESEARA
>Mature_173_residues
MLKIGYARLGDEQLGDEHLEQQLAELERLGCQVIRTEEAYVDGAPAPVLAAILDFIAEGDQLIVTRLEHLATTSRQLLDV
VARLQARGASLYVSDADLSTEGDGGRALRAVLEAVGQLEPTNGARRRRSGAEAHEIRALRRAGVGPVEIARRLGVSRMTV
WRKLREMESEARA

Specific function: This Protein Catalyzes The Site-Specific Recombination Of The Transposon And Also Regulates Its Frequency Of Transposition. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 18949; Mature: 18949

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKIGYARLGDEQLGDEHLEQQLAELERLGCQVIRTEEAYVDGAPAPVLAAILDFIAEGD
CCCCCCHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
QLIVTRLEHLATTSRQLLDVVARLQARGASLYVSDADLSTEGDGGRALRAVLEAVGQLEP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC
TNGARRRRSGAEAHEIRALRRAGVGPVEIARRLGVSRMTVWRKLREMESEARA
CCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLKIGYARLGDEQLGDEHLEQQLAELERLGCQVIRTEEAYVDGAPAPVLAAILDFIAEGD
CCCCCCHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
QLIVTRLEHLATTSRQLLDVVARLQARGASLYVSDADLSTEGDGGRALRAVLEAVGQLEP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC
TNGARRRRSGAEAHEIRALRRAGVGPVEIARRLGVSRMTVWRKLREMESEARA
CCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]