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The map label for this gene is ynaJ [H]

Identifier: 197104346

GI number: 197104346

Start: 973393

End: 974877

Strand: Reverse

Name: ynaJ [H]

Synonym: PHZ_c0880

Alternate gene names: 197104346

Gene position: 974877-973393 (Counterclockwise)

Preceding gene: 197104347

Following gene: 197104344

Centisome position: 24.39

GC content: 69.49

Gene sequence:

>1485_bases
GTGATCGCGCGTAACCTGAAACGAGGGCGTCCGCGAGAGACGCCTCCCCAGGTGGAGGAGCGTTTGGTGGTCAAGGCGAA
AACTGCTGCGCCGGCGGGCGCGCTGTCGATGGGCACGGTCTTCGCCTTCGCCAGCGCCAGCATTCCGATCCAGGCGCTGG
TGCTGGCCATCAGCGTCCACCTGCCGCGCTACTTCGCCAGCCACATCGGCCTCGAACTGGCCATGGTGGGCGCGGCCTTC
GCCATGGTCCGGCTGATCGACATCCCGATCGACGTCGGCCTCGGCATGGCCATGGACCGCACGCGCAGCCGCTTCGGCCG
CTACCGCCTCTGGCTGGCGCTTGGCGCCCCGGTGATGATGCTCGGCCTGTGGTTCGTGCTCCAGGCCGGCCCCTCGACCT
CGCAGCTCGGCCTCAGCGGCATCCTGCTGTTCCTCTACATCGGCTATTCGATGGTCTACCTCTCGCACCTCGCCTGGGGC
GGGGTGCTGGGGCCGACCTACGCGCAGCGCAACCGCGTGTTCGGGGCCGTCATCGGCCTGGGCGTGGTCGGCTCGGTGGC
CGTGCTGCTGATCCCGGTGGTGATGCAGTACCTCGGCGCCACCGACGGCGAGGGCGTCCGGGCCATGGTCTGGTTCATCA
TCCTGGCGCTTCCGGTCACCGTGGTGACGGTGCTGGCCTCCACGCGCGAGCCGATCACCCGCGACCACAAGGCCCACTTC
GGCTTCCGCGACTACCTCACCCTGCTGAAGCACGGGAACGTCGTGCGCCTGCTGGTCGCCGACCTGTGCGCCACCCTGGG
CCCGGGCTGGATGGCGACGCTGTACCTCTTCTACTTCAATGACAGCCGCGGCTTCGACACCGCCCAGGCCAACCTGCTGC
TGATGATCTACATCGCCGCCGGCTTCGCGGGCGCCCCGTTCATGGCCTGGCTGGGCAACCGGATCGGCAAGCACCGCAGC
CTGATGGTGGGCACAACGGTCTATTCGATCGGCCTCATGGTCGTGCCGTTCCTGCCGGCCGGCAACTTCCTGGCCTTCGC
GCCGGGGATGTTCATCGTCGGCGCCATGGCCGCCGGCTTCCTGGTGATGATCCGCGCGCTGACCGGCGACATCGCCGACG
AGATGCGCCTGGCGCACGGCCGCGAGTACATGGGCCTGATGTACGCCCTGACCATCGGCACCTCGAAGATCGCCTCGGGG
CTGTCGGCCCTGACCTTCGTGCTGCTGGCGGCGATCGGCTACCAGGCCCGGGCCGGGGCAGTGAACACCCCGGAGGCCAT
CCGGGCCCTGGAGCTGGTCTACATCGTGGGCCCGATCGTCTTCGTGATGGCCGCCGGCGCCAGCTTCATCGGCTACAAGC
TCACGCCCGAGCGGCACGCCGCCATCCGCCGCGAGCTGGACGAGCGCGACGCGATCTACGCCGAGGCCCCCGCGCTGGGC
AGCCTGACCGGCGACGACATGCTGGTCGAGCCGCGGCGGCCCTGA

Upstream 100 bases:

>100_bases
ATGCAGGGCGGCTGATCGCCCGCACGGCGACCTGACGTTCGGGCGGCCATCTGGCCGCCCGTTTCGTATCTGAAACCGGA
AACCGCTTGCGCGGGCTCAA

Downstream 100 bases:

>100_bases
TCGGCCTCGCTCTAGGGCCTGAGCTTCTCGGCCATCTGCAGGAAGGCCCAGGCGGCGGGCGTGTCGGGGCTGGTCGCCAC
CAGCGGCCGGCCGGCGTCGC

Product: sodium:galactoside symporter family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 494; Mature: 494

Protein sequence:

>494_residues
MIARNLKRGRPRETPPQVEERLVVKAKTAAPAGALSMGTVFAFASASIPIQALVLAISVHLPRYFASHIGLELAMVGAAF
AMVRLIDIPIDVGLGMAMDRTRSRFGRYRLWLALGAPVMMLGLWFVLQAGPSTSQLGLSGILLFLYIGYSMVYLSHLAWG
GVLGPTYAQRNRVFGAVIGLGVVGSVAVLLIPVVMQYLGATDGEGVRAMVWFIILALPVTVVTVLASTREPITRDHKAHF
GFRDYLTLLKHGNVVRLLVADLCATLGPGWMATLYLFYFNDSRGFDTAQANLLLMIYIAAGFAGAPFMAWLGNRIGKHRS
LMVGTTVYSIGLMVVPFLPAGNFLAFAPGMFIVGAMAAGFLVMIRALTGDIADEMRLAHGREYMGLMYALTIGTSKIASG
LSALTFVLLAAIGYQARAGAVNTPEAIRALELVYIVGPIVFVMAAGASFIGYKLTPERHAAIRRELDERDAIYAEAPALG
SLTGDDMLVEPRRP

Sequences:

>Translated_494_residues
MIARNLKRGRPRETPPQVEERLVVKAKTAAPAGALSMGTVFAFASASIPIQALVLAISVHLPRYFASHIGLELAMVGAAF
AMVRLIDIPIDVGLGMAMDRTRSRFGRYRLWLALGAPVMMLGLWFVLQAGPSTSQLGLSGILLFLYIGYSMVYLSHLAWG
GVLGPTYAQRNRVFGAVIGLGVVGSVAVLLIPVVMQYLGATDGEGVRAMVWFIILALPVTVVTVLASTREPITRDHKAHF
GFRDYLTLLKHGNVVRLLVADLCATLGPGWMATLYLFYFNDSRGFDTAQANLLLMIYIAAGFAGAPFMAWLGNRIGKHRS
LMVGTTVYSIGLMVVPFLPAGNFLAFAPGMFIVGAMAAGFLVMIRALTGDIADEMRLAHGREYMGLMYALTIGTSKIASG
LSALTFVLLAAIGYQARAGAVNTPEAIRALELVYIVGPIVFVMAAGASFIGYKLTPERHAAIRRELDERDAIYAEAPALG
SLTGDDMLVEPRRP
>Mature_494_residues
MIARNLKRGRPRETPPQVEERLVVKAKTAAPAGALSMGTVFAFASASIPIQALVLAISVHLPRYFASHIGLELAMVGAAF
AMVRLIDIPIDVGLGMAMDRTRSRFGRYRLWLALGAPVMMLGLWFVLQAGPSTSQLGLSGILLFLYIGYSMVYLSHLAWG
GVLGPTYAQRNRVFGAVIGLGVVGSVAVLLIPVVMQYLGATDGEGVRAMVWFIILALPVTVVTVLASTREPITRDHKAHF
GFRDYLTLLKHGNVVRLLVADLCATLGPGWMATLYLFYFNDSRGFDTAQANLLLMIYIAAGFAGAPFMAWLGNRIGKHRS
LMVGTTVYSIGLMVVPFLPAGNFLAFAPGMFIVGAMAAGFLVMIRALTGDIADEMRLAHGREYMGLMYALTIGTSKIASG
LSALTFVLLAAIGYQARAGAVNTPEAIRALELVYIVGPIVFVMAAGASFIGYKLTPERHAAIRRELDERDAIYAEAPALG
SLTGDDMLVEPRRP

Specific function: Unknown

COG id: COG2211

COG function: function code G; Na+/melibiose symporter and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:galactoside symporter (TC 2.A.2) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR001927
- InterPro:   IPR018043 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 53143; Mature: 53143

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIARNLKRGRPRETPPQVEERLVVKAKTAAPAGALSMGTVFAFASASIPIQALVLAISVH
CCCCCCCCCCCCCCCHHHHHHEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
LPRYFASHIGLELAMVGAAFAMVRLIDIPIDVGLGMAMDRTRSRFGRYRLWLALGAPVMM
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHEEEHHHHCCHHHH
LGLWFVLQAGPSTSQLGLSGILLFLYIGYSMVYLSHLAWGGVLGPTYAQRNRVFGAVIGL
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
GVVGSVAVLLIPVVMQYLGATDGEGVRAMVWFIILALPVTVVTVLASTREPITRDHKAHF
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCC
GFRDYLTLLKHGNVVRLLVADLCATLGPGWMATLYLFYFNDSRGFDTAQANLLLMIYIAA
CHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHH
GFAGAPFMAWLGNRIGKHRSLMVGTTVYSIGLMVVPFLPAGNFLAFAPGMFIVGAMAAGF
CCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
LVMIRALTGDIADEMRLAHGREYMGLMYALTIGTSKIASGLSALTFVLLAAIGYQARAGA
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCC
VNTPEAIRALELVYIVGPIVFVMAAGASFIGYKLTPERHAAIRRELDERDAIYAEAPALG
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCHHHHHHHHHHHHHCCEEECCCCCC
SLTGDDMLVEPRRP
CCCCCCEEECCCCC
>Mature Secondary Structure
MIARNLKRGRPRETPPQVEERLVVKAKTAAPAGALSMGTVFAFASASIPIQALVLAISVH
CCCCCCCCCCCCCCCHHHHHHEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
LPRYFASHIGLELAMVGAAFAMVRLIDIPIDVGLGMAMDRTRSRFGRYRLWLALGAPVMM
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHEEEHHHHCCHHHH
LGLWFVLQAGPSTSQLGLSGILLFLYIGYSMVYLSHLAWGGVLGPTYAQRNRVFGAVIGL
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
GVVGSVAVLLIPVVMQYLGATDGEGVRAMVWFIILALPVTVVTVLASTREPITRDHKAHF
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCC
GFRDYLTLLKHGNVVRLLVADLCATLGPGWMATLYLFYFNDSRGFDTAQANLLLMIYIAA
CHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHH
GFAGAPFMAWLGNRIGKHRSLMVGTTVYSIGLMVVPFLPAGNFLAFAPGMFIVGAMAAGF
CCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
LVMIRALTGDIADEMRLAHGREYMGLMYALTIGTSKIASGLSALTFVLLAAIGYQARAGA
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCC
VNTPEAIRALELVYIVGPIVFVMAAGASFIGYKLTPERHAAIRRELDERDAIYAEAPALG
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCHHHHHHHHHHHHHCCEEECCCCCC
SLTGDDMLVEPRRP
CCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]