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The map label for this gene is ycdC [C]

Identifier: 197104184

GI number: 197104184

Start: 790173

End: 790814

Strand: Reverse

Name: ycdC [C]

Synonym: PHZ_c0718

Alternate gene names: 197104184

Gene position: 790814-790173 (Counterclockwise)

Preceding gene: 197104189

Following gene: 197104183

Centisome position: 19.79

GC content: 73.21

Gene sequence:

>642_bases
ATGCTGCAGCCAGGCGAGCCGAAATTCCGTCGCCGCAAGGCGGACCGGCCGGCCGAGATCGTGCAGGCCGCCCTGGCCGT
TTTCGCCGAGAAGGGCTTCGCCGCCGCCAAGCTGGACGAGATCGCGGCGCGGGCCGGGGTCTCGAAGGGCGCGCTCTATC
TGTACTTCGAGACCAAGGAAGACCTGTTCCGGGCGGTGGTCACGCAGGGCGTGGCCCCGAACCTCGCCCCGGCGAAGGCG
CTCGCCGCCGCCCACCCGGGTCCCTTCCCCGACCTGGTCCGCGCCCTCGCCGGGCGGATCGCGCAAATCGTCCAGGAGAC
CGAGGTCGGCGGCGTGGCCAAGATGGTCATCGGCGAGGCGCGCAACTTCCCCGAGCTGGCGCGGGTCTGGCACGACGAAC
TGGCGGGCGAGGCCCTGGCGACGGTGGCCGGCGCCATCGCCGCCGCCCAGGACCGCGGCGAGGTGCGGCCGGGCGACCCC
CGCGTCTACGCCGTCCAACTGATCGCGCCCCTGCTGGTCGGCGTCCTGTGGCGCGAGACCTTCGTGCCCGTGGGGGCGCC
CGCCTTCGATATCGCCGCGATCATGCGCCAGCACGTGGAGACCATGCTGCGCGGCATGCTGGCCGAGGAGCCACGCCCAT
GA

Upstream 100 bases:

>100_bases
AAACGCCATGCGACGCCTCGCCGCCCCCGTTCCGCGAACGCCGATTGCCAACGCCATCTCCGCCTGTTACTAACTGACCG
GTCAGTTATGTGAGGGCGCG

Downstream 100 bases:

>100_bases
ACCGCCGGCGCATCCTGCCCCTCGCCCTCCTGGCGGCCGCGGCCCTGATCGTCGCCCTCCTCGTGCTCGCGCCCCGCTTC
CGGCCGGCGCCGACGCTCTC

Product: transcriptional regulator, TetR family

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator Tetr Family; Transcription Regulator TetR Family; Transcriptional Regulator Protein Tetr/Acrr-Family; Transcriptional Regulator TetR Family Protein; Transcriptional Regulatory Protein; TetR Family Transcription Regulator Protein; Bacterial Regulatory Protein TetR Family Protein; Transcriptional Regulator Protein; Transcriptional Regulator TetR; TRANSCRIPTIONal REGULATOR PROTEIN TetR/AcrR-Family

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MLQPGEPKFRRRKADRPAEIVQAALAVFAEKGFAAAKLDEIAARAGVSKGALYLYFETKEDLFRAVVTQGVAPNLAPAKA
LAAAHPGPFPDLVRALAGRIAQIVQETEVGGVAKMVIGEARNFPELARVWHDELAGEALATVAGAIAAAQDRGEVRPGDP
RVYAVQLIAPLLVGVLWRETFVPVGAPAFDIAAIMRQHVETMLRGMLAEEPRP

Sequences:

>Translated_213_residues
MLQPGEPKFRRRKADRPAEIVQAALAVFAEKGFAAAKLDEIAARAGVSKGALYLYFETKEDLFRAVVTQGVAPNLAPAKA
LAAAHPGPFPDLVRALAGRIAQIVQETEVGGVAKMVIGEARNFPELARVWHDELAGEALATVAGAIAAAQDRGEVRPGDP
RVYAVQLIAPLLVGVLWRETFVPVGAPAFDIAAIMRQHVETMLRGMLAEEPRP
>Mature_213_residues
MLQPGEPKFRRRKADRPAEIVQAALAVFAEKGFAAAKLDEIAARAGVSKGALYLYFETKEDLFRAVVTQGVAPNLAPAKA
LAAAHPGPFPDLVRALAGRIAQIVQETEVGGVAKMVIGEARNFPELARVWHDELAGEALATVAGAIAAAQDRGEVRPGDP
RVYAVQLIAPLLVGVLWRETFVPVGAPAFDIAAIMRQHVETMLRGMLAEEPRP

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22775; Mature: 22775

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQPGEPKFRRRKADRPAEIVQAALAVFAEKGFAAAKLDEIAARAGVSKGALYLYFETKE
CCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCHH
DLFRAVVTQGVAPNLAPAKALAAAHPGPFPDLVRALAGRIAQIVQETEVGGVAKMVIGEA
HHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHC
RNFPELARVWHDELAGEALATVAGAIAAAQDRGEVRPGDPRVYAVQLIAPLLVGVLWRET
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
FVPVGAPAFDIAAIMRQHVETMLRGMLAEEPRP
HCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLQPGEPKFRRRKADRPAEIVQAALAVFAEKGFAAAKLDEIAARAGVSKGALYLYFETKE
CCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCHH
DLFRAVVTQGVAPNLAPAKALAAAHPGPFPDLVRALAGRIAQIVQETEVGGVAKMVIGEA
HHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHC
RNFPELARVWHDELAGEALATVAGAIAAAQDRGEVRPGDPRVYAVQLIAPLLVGVLWRET
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
FVPVGAPAFDIAAIMRQHVETMLRGMLAEEPRP
HCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA