Click here to switch to the map view.

The map label for this gene is yjcR [C]

Identifier: 197104183

GI number: 197104183

Start: 789211

End: 790176

Strand: Reverse

Name: yjcR [C]

Synonym: PHZ_c0717

Alternate gene names: 197104183

Gene position: 790176-789211 (Counterclockwise)

Preceding gene: 197104184

Following gene: 197104182

Centisome position: 19.77

GC content: 77.12

Gene sequence:

>966_bases
ATGAACCGCCGGCGCATCCTGCCCCTCGCCCTCCTGGCGGCCGCGGCCCTGATCGTCGCCCTCCTCGTGCTCGCGCCCCG
CTTCCGGCCGGCGCCGACGCTCTCGGGCTACATCGAGGGCGAGCCGCTCTATCTCGCCGCTCCGGTGGCCGGGACGGTGC
GGACGTTGCACGTCGCCCGGGGCCAGGAGGTCAGGGCGGGCCAGCCGCTCTTCGTCGTCGACCCCGCCCAGGTGCGCAGC
CAGTACGACCAGGCCAGCGCCGAGCAGGCCGCCGCCCGGGCCCAGGCGCAGGACGCCCGCAAGGGCCAGAGACCCGTCGA
ACTGGCGGTGTTCGAGGCCAACATCGCCGCCGCCGAGGCGCAGGCGCGCGAAGCCCACGCGACCCTGCGCCGGATCGAGC
CCCTGGTCCGCCAGGGCTGGTACGCGCCGGCGCGGCTGGACGACGCCCGCGCCGCCGCCCAGGCCGCCGACGCCCAGGTC
CGCGCCGCGCGGCGCCAGCGCGACGCCGCCGCCCTCGGCGCCCGCGAGGACCAGATCCGCGCCGCCGACGCCCGAGTCAG
CCAGGCGGCGGCCGCCGTGGAGGGCGCCGAGGCCCGCCTGGCCGACGTGGCGCCCAAGGCCCCTGCCGACGCGCGGGTGG
AGGACGTCTTCTTCCACGCCGGCGAATGGGCGCCGGCGGGCCAGCCGATCCTGTCCCTGCTGCCCGACGCGCGGATCAAG
GTGCGGTTCTTCGTGCCCGAGCGCGAGCTCGCCGCATACCGCGTCGGCCGCACGGTGCGGTTCTCGTGCGACGGCTGCGC
CAAGGGACTGACGGCGCGGATCGAGTACGTGAGCCCCCGGCCCGAGTTCACCCCGCCGGTGATCTACAGCCGCGAGGCCC
GCGACCGGCTGGTCTACATGGTGGAGGCGCGGCCGGCCGCGCGGCTCAACCCCGGCCAGCCGGTCGACGTGGAGCCGCTC
AAGTGA

Upstream 100 bases:

>100_bases
CCTTCGTGCCCGTGGGGGCGCCCGCCTTCGATATCGCCGCGATCATGCGCCAGCACGTGGAGACCATGCTGCGCGGCATG
CTGGCCGAGGAGCCACGCCC

Downstream 100 bases:

>100_bases
CCCTGGCGATCGACGTCCACGGGCTGAACAAGAGCTTCGGCGACAAGCACGTCGTCCAGGACGTCACGATCCAGGTCGCG
GAGGGCCGGATCTGCGGCTT

Product: secretion protein, HlyD family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MNRRRILPLALLAAAALIVALLVLAPRFRPAPTLSGYIEGEPLYLAAPVAGTVRTLHVARGQEVRAGQPLFVVDPAQVRS
QYDQASAEQAAARAQAQDARKGQRPVELAVFEANIAAAEAQAREAHATLRRIEPLVRQGWYAPARLDDARAAAQAADAQV
RAARRQRDAAALGAREDQIRAADARVSQAAAAVEGAEARLADVAPKAPADARVEDVFFHAGEWAPAGQPILSLLPDARIK
VRFFVPERELAAYRVGRTVRFSCDGCAKGLTARIEYVSPRPEFTPPVIYSREARDRLVYMVEARPAARLNPGQPVDVEPL
K

Sequences:

>Translated_321_residues
MNRRRILPLALLAAAALIVALLVLAPRFRPAPTLSGYIEGEPLYLAAPVAGTVRTLHVARGQEVRAGQPLFVVDPAQVRS
QYDQASAEQAAARAQAQDARKGQRPVELAVFEANIAAAEAQAREAHATLRRIEPLVRQGWYAPARLDDARAAAQAADAQV
RAARRQRDAAALGAREDQIRAADARVSQAAAAVEGAEARLADVAPKAPADARVEDVFFHAGEWAPAGQPILSLLPDARIK
VRFFVPERELAAYRVGRTVRFSCDGCAKGLTARIEYVSPRPEFTPPVIYSREARDRLVYMVEARPAARLNPGQPVDVEPL
K
>Mature_321_residues
MNRRRILPLALLAAAALIVALLVLAPRFRPAPTLSGYIEGEPLYLAAPVAGTVRTLHVARGQEVRAGQPLFVVDPAQVRS
QYDQASAEQAAARAQAQDARKGQRPVELAVFEANIAAAEAQAREAHATLRRIEPLVRQGWYAPARLDDARAAAQAADAQV
RAARRQRDAAALGAREDQIRAADARVSQAAAAVEGAEARLADVAPKAPADARVEDVFFHAGEWAPAGQPILSLLPDARIK
VRFFVPERELAAYRVGRTVRFSCDGCAKGLTARIEYVSPRPEFTPPVIYSREARDRLVYMVEARPAARLNPGQPVDVEPL
K

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI1790519, Length=262, Percent_Identity=29.0076335877863, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789900, Length=303, Percent_Identity=29.3729372937294, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787013, Length=290, Percent_Identity=29.3103448275862, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 34759; Mature: 34759

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRRRILPLALLAAAALIVALLVLAPRFRPAPTLSGYIEGEPLYLAAPVAGTVRTLHVAR
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCEEEECCCCCCHHEEEECC
GQEVRAGQPLFVVDPAQVRSQYDQASAEQAAARAQAQDARKGQRPVELAVFEANIAAAEA
CCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHH
QAREAHATLRRIEPLVRQGWYAPARLDDARAAAQAADAQVRAARRQRDAAALGAREDQIR
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
AADARVSQAAAAVEGAEARLADVAPKAPADARVEDVFFHAGEWAPAGQPILSLLPDARIK
HHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHEEECCCCCCCCCHHHHHCCCCEEE
VRFFVPERELAAYRVGRTVRFSCDGCAKGLTARIEYVSPRPEFTPPVIYSREARDRLVYM
EEEECCCHHHHHHHCCCEEEECCCHHHCCCEEEEEEECCCCCCCCCEEECCCCCCEEEEE
VEARPAARLNPGQPVDVEPLK
EECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNRRRILPLALLAAAALIVALLVLAPRFRPAPTLSGYIEGEPLYLAAPVAGTVRTLHVAR
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCEEEECCCCCCHHEEEECC
GQEVRAGQPLFVVDPAQVRSQYDQASAEQAAARAQAQDARKGQRPVELAVFEANIAAAEA
CCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHH
QAREAHATLRRIEPLVRQGWYAPARLDDARAAAQAADAQVRAARRQRDAAALGAREDQIR
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
AADARVSQAAAAVEGAEARLADVAPKAPADARVEDVFFHAGEWAPAGQPILSLLPDARIK
HHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHEEECCCCCCCCCHHHHHCCCCEEE
VRFFVPERELAAYRVGRTVRFSCDGCAKGLTARIEYVSPRPEFTPPVIYSREARDRLVYM
EEEECCCHHHHHHHCCCEEEECCCHHHCCCEEEEEEECCCCCCCCCEEECCCCCCEEEEE
VEARPAARLNPGQPVDVEPLK
EECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]