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The map label for this gene is tnpR [C]

Identifier: 197104131

GI number: 197104131

Start: 716256

End: 716792

Strand: Reverse

Name: tnpR [C]

Synonym: PHZ_c0665

Alternate gene names: 197104131

Gene position: 716792-716256 (Counterclockwise)

Preceding gene: 197104132

Following gene: 197104130

Centisome position: 17.94

GC content: 72.25

Gene sequence:

>537_bases
GTGCGCTATGGCGTCGTCCGGGAGAGCCCGAGCCTGCCCCCGCCTGCGGTCCAGCGACGACTCCTCGACGGGGCCGCCTG
CGACGTGGTCCTCCAGGAGGGGCAGCCGACACCGGAGGCCCAGCGTCGCCTGGCCCGCCTGCTCTTCGGCCTGAAGCCCG
GCGACGAGGTGCTGGTGCACAGCCTGGACGTCTTCCAGCGCTCCACCGGCGAGCTGGCCCAGCTCATCCGCAACTTCCTC
GAGGTGGGCGTGAGCCTGCGCATCGTCGGCGACCGCGCCGAGGGCGAGGCGCTGAAGCCGGAGCAGAACGTGCTGAAGGT
GCTCTCCCTGCTGGCGGAGCACGAGAGCCGCAGGCCCAGCCGCACTCCGCCGGGCGCCGGCTCCCGCTTCAACAGCGGCA
GCCGCAACGCCCTCTCGAAGTACCAGGTCGACTACGCCCGCAAGCTCTACCGCGAGGGCGCGTCCCTGCGCTCGATCGGC
CTGCTGTTCCAGGTCTCGCCCAACGAGGTCTGGGCCGCGATCGGCGACCAGGCGTGA

Upstream 100 bases:

>100_bases
AAGCGTCACCCGGATGTCGCACGCCCCGCCGATAGTCCCGCCCGAGACAGGGGCGGGCGACCGCGGCCCTGCGTTGCGGA
TCGAGGGGGGAAGGCCAGCA

Downstream 100 bases:

>100_bases
ACCTGCTGGGCCTCGCGGCCGTCGCGCTGGGGATCCCCGTCGGCCTCCTCCTGGCCCGGCTCTCGGCCCGCGCGGGCGAT
GAGGCGCCGACGCCGCGGCG

Product: site-specific recombinase, resolvase family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MRYGVVRESPSLPPPAVQRRLLDGAACDVVLQEGQPTPEAQRRLARLLFGLKPGDEVLVHSLDVFQRSTGELAQLIRNFL
EVGVSLRIVGDRAEGEALKPEQNVLKVLSLLAEHESRRPSRTPPGAGSRFNSGSRNALSKYQVDYARKLYREGASLRSIG
LLFQVSPNEVWAAIGDQA

Sequences:

>Translated_178_residues
MRYGVVRESPSLPPPAVQRRLLDGAACDVVLQEGQPTPEAQRRLARLLFGLKPGDEVLVHSLDVFQRSTGELAQLIRNFL
EVGVSLRIVGDRAEGEALKPEQNVLKVLSLLAEHESRRPSRTPPGAGSRFNSGSRNALSKYQVDYARKLYREGASLRSIG
LLFQVSPNEVWAAIGDQA
>Mature_178_residues
MRYGVVRESPSLPPPAVQRRLLDGAACDVVLQEGQPTPEAQRRLARLLFGLKPGDEVLVHSLDVFQRSTGELAQLIRNFL
EVGVSLRIVGDRAEGEALKPEQNVLKVLSLLAEHESRRPSRTPPGAGSRFNSGSRNALSKYQVDYARKLYREGASLRSIG
LLFQVSPNEVWAAIGDQA

Specific function: This Protein Catalyzes The Site-Specific Recombination Of The Transposon And Also Regulates Its Frequency Of Transposition. [C]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19569; Mature: 19569

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYGVVRESPSLPPPAVQRRLLDGAACDVVLQEGQPTPEAQRRLARLLFGLKPGDEVLVH
CCCCCCCCCCCCCCHHHHHHHHCCHHHHHHEECCCCCHHHHHHHHHHHHCCCCCHHHHHH
SLDVFQRSTGELAQLIRNFLEVGVSLRIVGDRAEGEALKPEQNVLKVLSLLAEHESRRPS
HHHHHHCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
RTPPGAGSRFNSGSRNALSKYQVDYARKLYREGASLRSIGLLFQVSPNEVWAAIGDQA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHEEEEEECCHHHHHHCCCCC
>Mature Secondary Structure
MRYGVVRESPSLPPPAVQRRLLDGAACDVVLQEGQPTPEAQRRLARLLFGLKPGDEVLVH
CCCCCCCCCCCCCCHHHHHHHHCCHHHHHHEECCCCCHHHHHHHHHHHHCCCCCHHHHHH
SLDVFQRSTGELAQLIRNFLEVGVSLRIVGDRAEGEALKPEQNVLKVLSLLAEHESRRPS
HHHHHHCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
RTPPGAGSRFNSGSRNALSKYQVDYARKLYREGASLRSIGLLFQVSPNEVWAAIGDQA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHEEEEEECCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA