Definition Phenylobacterium zucineum HLK1, complete genome.
Accession NC_011144
Length 3,996,255

Click here to switch to the map view.

The map label for this gene is 197104118

Identifier: 197104118

GI number: 197104118

Start: 702258

End: 704843

Strand: Direct

Name: 197104118

Synonym: PHZ_c0652

Alternate gene names: NA

Gene position: 702258-704843 (Clockwise)

Preceding gene: 197104117

Following gene: 197104119

Centisome position: 17.57

GC content: 68.68

Gene sequence:

>2586_bases
ATGACCAAGCTCCACCGCCCGCTCGCCGGGCTGCTGCTCTGCACCACCGCGCTGATGGCGCCCGGCCTGGTCCAGGCCCA
GACCTCCGGCCAGGAGGTCGAGGAGATCGTGGTCCGGGGCAAGTACATCCCCGAGGTCATGCGCGAGACCTCCGAGGTGG
CCTCGATCGTCACCCCCGAGGACCTGGTCCGGCAGGGCGACGACACGGCGGCCGCGGCCCTGACGCGCCTCGCCGGCCTG
AGCGTCGTAAGCGGCCGGTTCGTCTACGTGCGGGGCCTCGGCGAGCGCTACTCCTCGGCCCTGCTGAACGGCTCGCCGCT
GCCCAGCCCCGAGCCGCTGCAGCGGGTCGTCCCGCTGGACCTCTTCCCGTCGAACGTGCTGGCGGGCGTCAACGTCCAGA
AGACCTATTCCCCGAACCTGCCGGGCGAGTTCGGCGGCGGCCTGATCGACCTTCGCACCATCGACACGCCCGACGATCCG
TTCGTCTCCCTGGGCTTCAGCGTCGGGATGAACGACGAGACCACGCTGAAGCGCGGGCTCACCTACTACGGCGGCGACAG
CGACCGGCTGGGGATCGACGACGGCACGCGCGAGCTGCCCGCCGCCATCCGCCGCGGCATCGAGACCGGAAAGCGGATCG
ACGCGGCCAACTTCGGCTCGGACGAGCTGACGCGGATGGGCCGCAGCTTCCAGAACGCCAACATCAACCTGCTGCAGTCG
ACCAACGACGTGCCCTTCAACGGCAGCGTCGACTTCGCCGCCGGCACGTCCTTCGCCATGGACTGGGGCACGCTGGGCGT
GGTGACGGTGCTGGGCTACGACTCCGGCTGGTCCACCCGCGACGCCATCCAGCAGGAGGGCGTGGTCAACCTGGACGGCC
TGGCGGTGCAGGAGGACCTGCGCTCGTTCTCGACCCAGAACGACGTCGTCATCAACGGCCTGACCAGCGTCGCGCTGGAG
CTCGACCACCACACCTTCAAGTGGACCAACTTCTACGTCCGCAACGTGACCAAGGAGACCCGCTCGGTCGAAGGCGAGAG
CGCCCGGGCCTCGAACTACATCCGCGACGACTGGACGAGCTGGTACCAGCGCGAGCTGATCGACACCCAGCTGACCGGCG
CGCACCGCTTCGGCGACCTGGAGATCGACTGGCGCGGCTCGTACGCCCGCACCGAGCGCGAGGTGCCCTACGAGCGACAG
GTCCGCTATCGCCGGGTGGACGACGTGTTCCTGCACAACCCGCAGTCCGACGCCAACTTCATCCGGTTCAGCGAGCTGGA
GGACAAGGCCGCCGGCGCCGGGGTGGACGTGCGCTACCGCCTGGCGAACGACTACGTCGCCGACCTGACCCTCTCGGCGG
GCTACGCGTGGTACGACAACGAGCGGTTCTCGGACAGCCGGGCCTTCCGGTTCACGATGAACTCGACGCCCTCCGTCGCC
TTCCAGATGCAGCGCGTCGACTTCCTCTACTCGGACTTCAACATCGGCCCCGACGGGCTGATCCTGCGCGAGGTGACAGG
CTCGGACGGCGCGGCCGCCTACGAGGCCAGCCTCACGACCCATGCCGGCTACGTGCAGGCCGAGGGCGAGATCTTCCCGG
CGGTCCGCGCCACGGTCGGCGCCCGCTACGAGAGCGGCAAGCAGTTCGTCCGCGCGATCGACCTCTTCGCGACGACGCAG
GACGCGGGGCACGAGCTGGAGAACGACTACCTGCTGCCCGCCGCGACGGTGACCTGGAACTTCGCCGAGGACCAGCAGCT
GCGCTTCGGCGCCTCGAAGACCATCGCCCGGCCGCAGTTCCGCGAGCAGGCGCCGCAGCTCTACCTCGACCCCGAGTCGG
ACCGCACCTTCATCGGCAACCCGTTCCTTGAGGACAGCGAGCTGATCAACCTGGACGCCCGCTACGAGCGCTACTTCGAC
CGCGGCCAGTTCGCGACGGCGGGGGTCTTCTACAAACAGATCGACCGGCCGATCGAATCCGTCGTGAACGAGTCCGGCTC
GGGCCTGCAGCAGAGCTTCCTGAACGCGCCGGAGGCGGTGCTCTACGGCTTCGAGGCCGAGTTCAAGAAGTTCTTCGAGC
CGCAGATCGACATCGCGGGCCTGGCCGGCCTGCGCTGGCTGGTGTCGGCCAACTACACCTACACCAAGGCCGAGGTGAAG
GTGGACGAGGGCGACGTGGTCTATCCGCGGACCAATCTCGGCCAGCCCGCGCCCGCGGCCAACTTCGTGATCGACGGCAG
CCCGCTGCAGGGCCAGTCCAAGCACCTGGCCAACGTGCAGGTCGGCTTCGAGACCGAGGACGGCATGACCCAGGCGACCC
TGCTCGCCAATTACGCCAGCAAGCGGGTCACCGCCCGCGGCCAGGCGGGCGCGCCGGACTTCGTGCAGGAGCCGGGCGTG
ATGCTCGACTTCACCTTCCGCCACCGCTTCGAGCTGTGGGCGCAGGAGTTCACCTTCGGCGTCGAGGCGCGCAACCTGCT
GGGCGAGGAGTTCGACGAATACCAGAAGCGCAACGGCGACGAGATCAAGCTCAACAACTACGAGCTGGGCCGCAGCGTCT
CGGTGAGCCTCTCGGCCCGCTTCTGA

Upstream 100 bases:

>100_bases
ACCTGCGGCCTGGCCGCCGGCAGCAGCTGCTGATCACGCGGGGCGGGGCCTCGCGGCCCCGCCTCCTCCGCGTCCGACGA
ACTCCAGAGGCGATCCTGAC

Downstream 100 bases:

>100_bases
AGGTGAGCGCGGGCGGTTGCGGCGCCTCGCCGCGGCCGCCCGGGCGACCCCGAGGCGCGCTGTCACCTTAGCTTCATCCA
AGCGTCACGGGAACGTCGGC

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor Plug; NB-Dependent Outer Membrane Receptor; Outer Membrane Protein; NB-Dependent Receptor Protein; Nb-Dependent Receptor; NB-Dependent Outer Membrane Receptor Protein; Nb-Dependent Receptor Plug; LOW QUALITY PROTEIN nB-Dependent Receptor; NB-Dependent Receptor-Like Protein; NB Dependent/Ligand-Gated Channel; NB-Dependent Receptor Subfamily; NB-Dependent Receptor Plug Domain Protein; NB-Dependent Receptor Domain Protein

Number of amino acids: Translated: 861; Mature: 860

Protein sequence:

>861_residues
MTKLHRPLAGLLLCTTALMAPGLVQAQTSGQEVEEIVVRGKYIPEVMRETSEVASIVTPEDLVRQGDDTAAAALTRLAGL
SVVSGRFVYVRGLGERYSSALLNGSPLPSPEPLQRVVPLDLFPSNVLAGVNVQKTYSPNLPGEFGGGLIDLRTIDTPDDP
FVSLGFSVGMNDETTLKRGLTYYGGDSDRLGIDDGTRELPAAIRRGIETGKRIDAANFGSDELTRMGRSFQNANINLLQS
TNDVPFNGSVDFAAGTSFAMDWGTLGVVTVLGYDSGWSTRDAIQQEGVVNLDGLAVQEDLRSFSTQNDVVINGLTSVALE
LDHHTFKWTNFYVRNVTKETRSVEGESARASNYIRDDWTSWYQRELIDTQLTGAHRFGDLEIDWRGSYARTEREVPYERQ
VRYRRVDDVFLHNPQSDANFIRFSELEDKAAGAGVDVRYRLANDYVADLTLSAGYAWYDNERFSDSRAFRFTMNSTPSVA
FQMQRVDFLYSDFNIGPDGLILREVTGSDGAAAYEASLTTHAGYVQAEGEIFPAVRATVGARYESGKQFVRAIDLFATTQ
DAGHELENDYLLPAATVTWNFAEDQQLRFGASKTIARPQFREQAPQLYLDPESDRTFIGNPFLEDSELINLDARYERYFD
RGQFATAGVFYKQIDRPIESVVNESGSGLQQSFLNAPEAVLYGFEAEFKKFFEPQIDIAGLAGLRWLVSANYTYTKAEVK
VDEGDVVYPRTNLGQPAPAANFVIDGSPLQGQSKHLANVQVGFETEDGMTQATLLANYASKRVTARGQAGAPDFVQEPGV
MLDFTFRHRFELWAQEFTFGVEARNLLGEEFDEYQKRNGDEIKLNNYELGRSVSVSLSARF

Sequences:

>Translated_861_residues
MTKLHRPLAGLLLCTTALMAPGLVQAQTSGQEVEEIVVRGKYIPEVMRETSEVASIVTPEDLVRQGDDTAAAALTRLAGL
SVVSGRFVYVRGLGERYSSALLNGSPLPSPEPLQRVVPLDLFPSNVLAGVNVQKTYSPNLPGEFGGGLIDLRTIDTPDDP
FVSLGFSVGMNDETTLKRGLTYYGGDSDRLGIDDGTRELPAAIRRGIETGKRIDAANFGSDELTRMGRSFQNANINLLQS
TNDVPFNGSVDFAAGTSFAMDWGTLGVVTVLGYDSGWSTRDAIQQEGVVNLDGLAVQEDLRSFSTQNDVVINGLTSVALE
LDHHTFKWTNFYVRNVTKETRSVEGESARASNYIRDDWTSWYQRELIDTQLTGAHRFGDLEIDWRGSYARTEREVPYERQ
VRYRRVDDVFLHNPQSDANFIRFSELEDKAAGAGVDVRYRLANDYVADLTLSAGYAWYDNERFSDSRAFRFTMNSTPSVA
FQMQRVDFLYSDFNIGPDGLILREVTGSDGAAAYEASLTTHAGYVQAEGEIFPAVRATVGARYESGKQFVRAIDLFATTQ
DAGHELENDYLLPAATVTWNFAEDQQLRFGASKTIARPQFREQAPQLYLDPESDRTFIGNPFLEDSELINLDARYERYFD
RGQFATAGVFYKQIDRPIESVVNESGSGLQQSFLNAPEAVLYGFEAEFKKFFEPQIDIAGLAGLRWLVSANYTYTKAEVK
VDEGDVVYPRTNLGQPAPAANFVIDGSPLQGQSKHLANVQVGFETEDGMTQATLLANYASKRVTARGQAGAPDFVQEPGV
MLDFTFRHRFELWAQEFTFGVEARNLLGEEFDEYQKRNGDEIKLNNYELGRSVSVSLSARF
>Mature_860_residues
TKLHRPLAGLLLCTTALMAPGLVQAQTSGQEVEEIVVRGKYIPEVMRETSEVASIVTPEDLVRQGDDTAAAALTRLAGLS
VVSGRFVYVRGLGERYSSALLNGSPLPSPEPLQRVVPLDLFPSNVLAGVNVQKTYSPNLPGEFGGGLIDLRTIDTPDDPF
VSLGFSVGMNDETTLKRGLTYYGGDSDRLGIDDGTRELPAAIRRGIETGKRIDAANFGSDELTRMGRSFQNANINLLQST
NDVPFNGSVDFAAGTSFAMDWGTLGVVTVLGYDSGWSTRDAIQQEGVVNLDGLAVQEDLRSFSTQNDVVINGLTSVALEL
DHHTFKWTNFYVRNVTKETRSVEGESARASNYIRDDWTSWYQRELIDTQLTGAHRFGDLEIDWRGSYARTEREVPYERQV
RYRRVDDVFLHNPQSDANFIRFSELEDKAAGAGVDVRYRLANDYVADLTLSAGYAWYDNERFSDSRAFRFTMNSTPSVAF
QMQRVDFLYSDFNIGPDGLILREVTGSDGAAAYEASLTTHAGYVQAEGEIFPAVRATVGARYESGKQFVRAIDLFATTQD
AGHELENDYLLPAATVTWNFAEDQQLRFGASKTIARPQFREQAPQLYLDPESDRTFIGNPFLEDSELINLDARYERYFDR
GQFATAGVFYKQIDRPIESVVNESGSGLQQSFLNAPEAVLYGFEAEFKKFFEPQIDIAGLAGLRWLVSANYTYTKAEVKV
DEGDVVYPRTNLGQPAPAANFVIDGSPLQGQSKHLANVQVGFETEDGMTQATLLANYASKRVTARGQAGAPDFVQEPGVM
LDFTFRHRFELWAQEFTFGVEARNLLGEEFDEYQKRNGDEIKLNNYELGRSVSVSLSARF

Specific function: Unknown

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 95583; Mature: 95452

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: PS01156 TONB_DEPENDENT_REC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKLHRPLAGLLLCTTALMAPGLVQAQTSGQEVEEIVVRGKYIPEVMRETSEVASIVTPE
CCCCHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCH
DLVRQGDDTAAAALTRLAGLSVVSGRFVYVRGLGERYSSALLNGSPLPSPEPLQRVVPLD
HHHHCCCCHHHHHHHHHHCCCEECCCEEEEEECCHHHHHHHCCCCCCCCCCHHHHCCCCC
LFPSNVLAGVNVQKTYSPNLPGEFGGGLIDLRTIDTPDDPFVSLGFSVGMNDETTLKRGL
CCCCHHEECCEEEECCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCHHHHHCC
TYYGGDSDRLGIDDGTRELPAAIRRGIETGKRIDAANFGSDELTRMGRSFQNANINLLQS
EEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEC
TNDVPFNGSVDFAAGTSFAMDWGTLGVVTVLGYDSGWSTRDAIQQEGVVNLDGLAVQEDL
CCCCCCCCCCCCCCCCCEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCHHHHHHH
RSFSTQNDVVINGLTSVALELDHHTFKWTNFYVRNVTKETRSVEGESARASNYIRDDWTS
HHHCCCCCEEEECCEEEEEEECCCEEEEEEEEEEHHHHHHHCCCCCCHHHCCCHHHHHHH
WYQRELIDTQLTGAHRFGDLEIDWRGSYARTEREVPYERQVRYRRVDDVFLHNPQSDANF
HHHHHHHHHHCCCCCCCCCEEEEECCCHHCCCCCCCHHHHHHHHHHCHHEEECCCCCCCE
IRFSELEDKAAGAGVDVRYRLANDYVADLTLSAGYAWYDNERFSDSRAFRFTMNSTPSVA
EEEHHHHHHHCCCCCEEEEEECCCEEEEEEEECCEEEECCCCCCCCCEEEEEECCCCCCE
FQMQRVDFLYSDFNIGPDGLILREVTGSDGAAAYEASLTTHAGYVQAEGEIFPAVRATVG
EEEHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCEEEECCCCCHHHHHHHC
ARYESGKQFVRAIDLFATTQDAGHELENDYLLPAATVTWNFAEDQQLRFGASKTIARPQF
CCHHHHHHHHHHHHHHHCCCHHCCCCCCCEEEEEEEEEEECCCCCCEECCCCCCCCCCHH
REQAPQLYLDPESDRTFIGNPFLEDSELINLDARYERYFDRGQFATAGVFYKQIDRPIES
HHHCCCEEECCCCCCEEECCCCCCCCCEEECCHHHHHHHCCCCEEHHHHHHHHHHHHHHH
VVNESGSGLQQSFLNAPEAVLYGFEAEFKKFFEPQIDIAGLAGLRWLVSANYTYTKAEVK
HHCCCCCCHHHHHCCCCCCEEECCHHHHHHHCCCCCCCHHHHHEEEEEECCCEEEEEEEE
VDEGDVVYPRTNLGQPAPAANFVIDGSPLQGQSKHLANVQVGFETEDGMTQATLLANYAS
ECCCCEECCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHH
KRVTARGQAGAPDFVQEPGVMLDFTFRHRFELWAQEFTFGVEARNLLGEEFDEYQKRNGD
HHEEECCCCCCCHHHHCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
EIKLNNYELGRSVSVSLSARF
EEEECCEECCCEEEEEEEECC
>Mature Secondary Structure 
TKLHRPLAGLLLCTTALMAPGLVQAQTSGQEVEEIVVRGKYIPEVMRETSEVASIVTPE
CCCHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCH
DLVRQGDDTAAAALTRLAGLSVVSGRFVYVRGLGERYSSALLNGSPLPSPEPLQRVVPLD
HHHHCCCCHHHHHHHHHHCCCEECCCEEEEEECCHHHHHHHCCCCCCCCCCHHHHCCCCC
LFPSNVLAGVNVQKTYSPNLPGEFGGGLIDLRTIDTPDDPFVSLGFSVGMNDETTLKRGL
CCCCHHEECCEEEECCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCHHHHHCC
TYYGGDSDRLGIDDGTRELPAAIRRGIETGKRIDAANFGSDELTRMGRSFQNANINLLQS
EEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEC
TNDVPFNGSVDFAAGTSFAMDWGTLGVVTVLGYDSGWSTRDAIQQEGVVNLDGLAVQEDL
CCCCCCCCCCCCCCCCCEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCHHHHHHH
RSFSTQNDVVINGLTSVALELDHHTFKWTNFYVRNVTKETRSVEGESARASNYIRDDWTS
HHHCCCCCEEEECCEEEEEEECCCEEEEEEEEEEHHHHHHHCCCCCCHHHCCCHHHHHHH
WYQRELIDTQLTGAHRFGDLEIDWRGSYARTEREVPYERQVRYRRVDDVFLHNPQSDANF
HHHHHHHHHHCCCCCCCCCEEEEECCCHHCCCCCCCHHHHHHHHHHCHHEEECCCCCCCE
IRFSELEDKAAGAGVDVRYRLANDYVADLTLSAGYAWYDNERFSDSRAFRFTMNSTPSVA
EEEHHHHHHHCCCCCEEEEEECCCEEEEEEEECCEEEECCCCCCCCCEEEEEECCCCCCE
FQMQRVDFLYSDFNIGPDGLILREVTGSDGAAAYEASLTTHAGYVQAEGEIFPAVRATVG
EEEHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCEEEECCCCCHHHHHHHC
ARYESGKQFVRAIDLFATTQDAGHELENDYLLPAATVTWNFAEDQQLRFGASKTIARPQF
CCHHHHHHHHHHHHHHHCCCHHCCCCCCCEEEEEEEEEEECCCCCCEECCCCCCCCCCHH
REQAPQLYLDPESDRTFIGNPFLEDSELINLDARYERYFDRGQFATAGVFYKQIDRPIES
HHHCCCEEECCCCCCEEECCCCCCCCCEEECCHHHHHHHCCCCEEHHHHHHHHHHHHHHH
VVNESGSGLQQSFLNAPEAVLYGFEAEFKKFFEPQIDIAGLAGLRWLVSANYTYTKAEVK
HHCCCCCCHHHHHCCCCCCEEECCHHHHHHHCCCCCCCHHHHHEEEEEECCCEEEEEEEE
VDEGDVVYPRTNLGQPAPAANFVIDGSPLQGQSKHLANVQVGFETEDGMTQATLLANYAS
ECCCCEECCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHH
KRVTARGQAGAPDFVQEPGVMLDFTFRHRFELWAQEFTFGVEARNLLGEEFDEYQKRNGD
HHEEECCCCCCCHHHHCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
EIKLNNYELGRSVSVSLSARF
EEEECCEECCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA