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The map label for this gene is cspE [C]

Identifier: 197104106

GI number: 197104106

Start: 690187

End: 690756

Strand: Reverse

Name: cspE [C]

Synonym: PHZ_c0640

Alternate gene names: 197104106

Gene position: 690756-690187 (Counterclockwise)

Preceding gene: 197104107

Following gene: 197104103

Centisome position: 17.29

GC content: 72.46

Gene sequence:

>570_bases
ATGCAACTGCCGCTGCAGATCACCTTCGAAGGGGGCCTTGAGCCCAGCGAGGCGCTGAAGCGCCGGATCGAGCGCGAGGC
CGAGAAGCTCGAACGCTTCCACGACCGGATCACCTCGTGCCGCGTGGCCGTGATCGGCCGGGCCCACCGCCGCCGGCACG
GCGACCTCTACGCCGTGCGCCTGCAGATCACCGCGCCCGGCGAGGCCGACGTGATGATCGACCGCAACCCGCCCCAGGAC
CACGCACACGAGGACGCCTTCGTCGCGGTGCGCGACGCCTTCGCCGCCGCCCGCCGGCGGCTGCAGGACCGCTACCGCCG
CCAGCGCGGCGACGTGAAGGTTCACGAGGAGCCGCCGCAGGGCCGGATCGCCCGGCTGTTCACCGACGAGGGCTACGGCT
TCCTCGAGAGCGACGACGGCCGCGAGATCTACTTCCACCGCAACGCCCTGGTGAACGGCGGCTTCGAGCACCTCGCCGTC
GGCGACCGGGTCCGCTTCGCCGAGAGCGAAGGCGTGAAGGGGCCCCAGGCCTCGACCGTCCACCTCGTGAAGGGCGCCGC
CCAGGCCTAG

Upstream 100 bases:

>100_bases
CTGGCCGGCGCGATCCGCAAGGACCTGACCAAGGCGCCCGACAGCACGCTCGGCGCGTGGCTCGACGAGACCCGTTTCAA
CCCGTGAGGCGCTGACCCCC

Downstream 100 bases:

>100_bases
CCCGGACACCCGCCGGGCGCCGCGGCGATCACCTGCGCGCGCGCCGGCCGGAAGGCGGTGCAGCCCTTCAGCCCCCGCGC
GTGCGCCCCGGCGTAGATCC

Product: cold-shock DNA-binding domain protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MQLPLQITFEGGLEPSEALKRRIEREAEKLERFHDRITSCRVAVIGRAHRRRHGDLYAVRLQITAPGEADVMIDRNPPQD
HAHEDAFVAVRDAFAAARRRLQDRYRRQRGDVKVHEEPPQGRIARLFTDEGYGFLESDDGREIYFHRNALVNGGFEHLAV
GDRVRFAESEGVKGPQASTVHLVKGAAQA

Sequences:

>Translated_189_residues
MQLPLQITFEGGLEPSEALKRRIEREAEKLERFHDRITSCRVAVIGRAHRRRHGDLYAVRLQITAPGEADVMIDRNPPQD
HAHEDAFVAVRDAFAAARRRLQDRYRRQRGDVKVHEEPPQGRIARLFTDEGYGFLESDDGREIYFHRNALVNGGFEHLAV
GDRVRFAESEGVKGPQASTVHLVKGAAQA
>Mature_189_residues
MQLPLQITFEGGLEPSEALKRRIEREAEKLERFHDRITSCRVAVIGRAHRRRHGDLYAVRLQITAPGEADVMIDRNPPQD
HAHEDAFVAVRDAFAAARRRLQDRYRRQRGDVKVHEEPPQGRIARLFTDEGYGFLESDDGREIYFHRNALVNGGFEHLAV
GDRVRFAESEGVKGPQASTVHLVKGAAQA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21442; Mature: 21442

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLPLQITFEGGLEPSEALKRRIEREAEKLERFHDRITSCRVAVIGRAHRRRHGDLYAVR
CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
LQITAPGEADVMIDRNPPQDHAHEDAFVAVRDAFAAARRRLQDRYRRQRGDVKVHEEPPQ
EEEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCC
GRIARLFTDEGYGFLESDDGREIYFHRNALVNGGFEHLAVGDRVRFAESEGVKGPQASTV
CCEEEEEECCCCCEEECCCCCEEEEECCEEECCCHHHEECCCEEEECCCCCCCCCCCCEE
HLVKGAAQA
EEECCCCCC
>Mature Secondary Structure
MQLPLQITFEGGLEPSEALKRRIEREAEKLERFHDRITSCRVAVIGRAHRRRHGDLYAVR
CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
LQITAPGEADVMIDRNPPQDHAHEDAFVAVRDAFAAARRRLQDRYRRQRGDVKVHEEPPQ
EEEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCC
GRIARLFTDEGYGFLESDDGREIYFHRNALVNGGFEHLAVGDRVRFAESEGVKGPQASTV
CCEEEEEECCCCCEEECCCCCEEEEECCEEECCCHHHEECCCEEEECCCCCCCCCCCCEE
HLVKGAAQA
EEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA