| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is 197104074
Identifier: 197104074
GI number: 197104074
Start: 651445
End: 652746
Strand: Reverse
Name: 197104074
Synonym: PHZ_c0608
Alternate gene names: NA
Gene position: 652746-651445 (Counterclockwise)
Preceding gene: 197104077
Following gene: 197104073
Centisome position: 16.33
GC content: 72.27
Gene sequence:
>1302_bases ATGGCCGTCAAAGACCCCTACGGAATGGAATTGTCAGGCGCGAGCGCCGCCGCGGCAGAAAAATTCCAGCAGGCGTTGCA CGCCTACCACTGTTATTCGGGCGATCCGATGACTCCCCTGGAGGAGGCCATCGCCGACAGCCCGCGCTTCACCATGGCCC ACGTGCTGAAGGCGTACCTGACCCTGATCGGGGAGCCGGCCGAGGTGGCCATGCAGGGCGTGCAGGCCTTCGAGGCCGCC AAGGACTTCAACGCCAACACCCGCGAGCTCGGCCACCTGGCCGCCCTCGGCAGCCTGCTGGCCGGCGAGATCCGCAGCGC CGCGCGCATCCTGGAGGACGTCAGCATCGCCCATCCGCACGATGCGCTGGCCCTGCACGCCGGCCAGCTCTTCGACTTCC TGCTGGGCGATTCCCGCATGCTGCGCGACCGCATCGGCCGGGTCGTCCCGCACTGGAGCGAGGACATGCCCGACTGCTCG GCCGTCCTGGGCCTCTTCGCCTTCGGCCTGGAGGAGACCGGCCTCTACGACCGCGCCGAGGCGGTCGGCCGCCGCGCCGT CGAGCTGGAGCCGCGCAACAACTGGGCCCAGCACGCCGTCGCCCACGTGCTGGAGATGCAGGACCGCCGCCGCGACGGTC TGGCCTGGATGCTGCGCGAGAACACCGCCTGGCAGCCGGAGGCCCTGCTGGGGGTCCACAACTGGTGGCACACCGCCCTC TTCCACCTGGGCCTGGGCGAGGTGGACGAGGTGCTGAAGCTCTACGACGGCCCGATCTTCGGCGAGCCCTCGGCCCGCGG CTTCGACCTGGTGGACGCCGCCGCCATGCTGTGGCGCCTGAACCTGCGCGGCATCGACGTGGGCGGCCGCTGGAGCGTCC TGGCCGACACCTTCGCGGGTGAGCCCTCCGGGCGCTCGGCTTTCGTCGACGCCCACGCCATGATGGCCTACGTGGCCACG GGCCGGCAGGCGGACGCCCAGGCCCTGCTGGACGCCCAGAAGGCCGCCGCCGAGGGGCCGGGCGACAACGGCTACTTCGC CCGCGAGGTGGGCCTGCCGCTCACCCAGGCGATCCACGCCTTCGGCCATGGCGACTACGCCCGATCGGTCGAGCTGATGC GCGGCGTCCGCAACAAGTCGGCCCGCTTCGGCGGCAGCCACGCCCAGCGCGACGTCATCGACCTGACGCTGATCGAGGCC GCCGGGCGTAGCGGCGAACACAGCCTGAAGGCGGCCCTGCTGGCGGAACGCGCCGCCGCCCGGCCGCTCGCCGACACCGC CGCGCGGCGCCTGGCCGCGTGA
Upstream 100 bases:
>100_bases ATAACGGGAATCGGCGAACGGCGCGAACCGACCGCGCTTGCGCTAGAGAGACAGGCTGGAACGGCTTACCCCTCCCCGCC CCAAGTCGAGGAGAAAAGCG
Downstream 100 bases:
>100_bases CGGCGACGGGCGGCGGCCCGCCCCGAGTTCGCCGCCCGTCATCTTCTTCCCGAGGTGGTTCCGGGGGGGACCACATCCAA CTGGAGCCTCCGCGGCGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 433; Mature: 432
Protein sequence:
>433_residues MAVKDPYGMELSGASAAAAEKFQQALHAYHCYSGDPMTPLEEAIADSPRFTMAHVLKAYLTLIGEPAEVAMQGVQAFEAA KDFNANTRELGHLAALGSLLAGEIRSAARILEDVSIAHPHDALALHAGQLFDFLLGDSRMLRDRIGRVVPHWSEDMPDCS AVLGLFAFGLEETGLYDRAEAVGRRAVELEPRNNWAQHAVAHVLEMQDRRRDGLAWMLRENTAWQPEALLGVHNWWHTAL FHLGLGEVDEVLKLYDGPIFGEPSARGFDLVDAAAMLWRLNLRGIDVGGRWSVLADTFAGEPSGRSAFVDAHAMMAYVAT GRQADAQALLDAQKAAAEGPGDNGYFAREVGLPLTQAIHAFGHGDYARSVELMRGVRNKSARFGGSHAQRDVIDLTLIEA AGRSGEHSLKAALLAERAAARPLADTAARRLAA
Sequences:
>Translated_433_residues MAVKDPYGMELSGASAAAAEKFQQALHAYHCYSGDPMTPLEEAIADSPRFTMAHVLKAYLTLIGEPAEVAMQGVQAFEAA KDFNANTRELGHLAALGSLLAGEIRSAARILEDVSIAHPHDALALHAGQLFDFLLGDSRMLRDRIGRVVPHWSEDMPDCS AVLGLFAFGLEETGLYDRAEAVGRRAVELEPRNNWAQHAVAHVLEMQDRRRDGLAWMLRENTAWQPEALLGVHNWWHTAL FHLGLGEVDEVLKLYDGPIFGEPSARGFDLVDAAAMLWRLNLRGIDVGGRWSVLADTFAGEPSGRSAFVDAHAMMAYVAT GRQADAQALLDAQKAAAEGPGDNGYFAREVGLPLTQAIHAFGHGDYARSVELMRGVRNKSARFGGSHAQRDVIDLTLIEA AGRSGEHSLKAALLAERAAARPLADTAARRLAA >Mature_432_residues AVKDPYGMELSGASAAAAEKFQQALHAYHCYSGDPMTPLEEAIADSPRFTMAHVLKAYLTLIGEPAEVAMQGVQAFEAAK DFNANTRELGHLAALGSLLAGEIRSAARILEDVSIAHPHDALALHAGQLFDFLLGDSRMLRDRIGRVVPHWSEDMPDCSA VLGLFAFGLEETGLYDRAEAVGRRAVELEPRNNWAQHAVAHVLEMQDRRRDGLAWMLRENTAWQPEALLGVHNWWHTALF HLGLGEVDEVLKLYDGPIFGEPSARGFDLVDAAAMLWRLNLRGIDVGGRWSVLADTFAGEPSGRSAFVDAHAMMAYVATG RQADAQALLDAQKAAAEGPGDNGYFAREVGLPLTQAIHAFGHGDYARSVELMRGVRNKSARFGGSHAQRDVIDLTLIEAA GRSGEHSLKAALLAERAAARPLADTAARRLAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI116812608, Length=433, Percent_Identity=33.7182448036951, Blast_Score=229, Evalue=3e-60, Organism=Caenorhabditis elegans, GI32564653, Length=432, Percent_Identity=31.25, Blast_Score=184, Evalue=5e-47, Organism=Caenorhabditis elegans, GI17537551, Length=317, Percent_Identity=32.4921135646688, Blast_Score=163, Evalue=1e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46882; Mature: 46750
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVKDPYGMELSGASAAAAEKFQQALHAYHCYSGDPMTPLEEAIADSPRFTMAHVLKAYL CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHH TLIGEPAEVAMQGVQAFEAAKDFNANTRELGHLAALGSLLAGEIRSAARILEDVSIAHPH HHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC DALALHAGQLFDFLLGDSRMLRDRIGRVVPHWSEDMPDCSAVLGLFAFGLEETGLYDRAE HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHH AVGRRAVELEPRNNWAQHAVAHVLEMQDRRRDGLAWMLRENTAWQPEALLGVHNWWHTAL HHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHH FHLGLGEVDEVLKLYDGPIFGEPSARGFDLVDAAAMLWRLNLRGIDVGGRWSVLADTFAG HHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCC EPSGRSAFVDAHAMMAYVATGRQADAQALLDAQKAAAEGPGDNGYFAREVGLPLTQAIHA CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEHHHCCCHHHHHHH FGHGDYARSVELMRGVRNKSARFGGSHAQRDVIDLTLIEAAGRSGEHSLKAALLAERAAA HCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC RPLADTAARRLAA CCHHHHHHHHHCC >Mature Secondary Structure AVKDPYGMELSGASAAAAEKFQQALHAYHCYSGDPMTPLEEAIADSPRFTMAHVLKAYL CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHH TLIGEPAEVAMQGVQAFEAAKDFNANTRELGHLAALGSLLAGEIRSAARILEDVSIAHPH HHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC DALALHAGQLFDFLLGDSRMLRDRIGRVVPHWSEDMPDCSAVLGLFAFGLEETGLYDRAE HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHH AVGRRAVELEPRNNWAQHAVAHVLEMQDRRRDGLAWMLRENTAWQPEALLGVHNWWHTAL HHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHH FHLGLGEVDEVLKLYDGPIFGEPSARGFDLVDAAAMLWRLNLRGIDVGGRWSVLADTFAG HHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCC EPSGRSAFVDAHAMMAYVATGRQADAQALLDAQKAAAEGPGDNGYFAREVGLPLTQAIHA CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEHHHCCCHHHHHHH FGHGDYARSVELMRGVRNKSARFGGSHAQRDVIDLTLIEAAGRSGEHSLKAALLAERAAA HCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC RPLADTAARRLAA CCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA