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The map label for this gene is glcD [C]

Identifier: 197104026

GI number: 197104026

Start: 593074

End: 594483

Strand: Direct

Name: glcD [C]

Synonym: PHZ_c0560

Alternate gene names: 197104026

Gene position: 593074-594483 (Clockwise)

Preceding gene: 197104025

Following gene: 197104027

Centisome position: 14.84

GC content: 72.55

Gene sequence:

>1410_bases
ATGACCGCTCCCGTCCCCGCCGACGTGATCTCGCGCCTCAAGGCCGTGCTCGGCGAGGGCGGCTGGAGCGAGGATCCCCA
GCGCATCGCGCCGAAGCTGGTGGAGTGGCGCGACCGCTGGGTCGGCCAGACCCCGTTCCTGGCGCTGCCCAAGACGACGT
TCGAGGTGGCGGCGGTGGTCGGCGTCTGCGGACAGGCCGGCCAGCCGATCACCATCCAGGGCGGCAACACGGGGCTGGTC
GGGGGACAGATCCCGCAGGGCGAGATCCTGCTCTCCACCGAACGGATGCGGGCGATCCGCGAGGTCTCGCCGCTGGACGA
CGTGATCACCGCCGAGGCCGGCGTCACCGTGGCCGAGGTGCATGCGGCGGCGGCGGGCGTGCGCCGCCGCTTCCCGCTGG
GGCTGGCCTCGGAGGGCTCGGCCACCGTGGGCGGCGTCGTTTCGACCAACGCCGGCGGCACCCAGGTGCTGCGCTATGGC
TCGACGCGCAACCTGGTGCTGGGTCTGGAGGCCGTGCTGCCGAACGGCGAGGTCTGGAACGGCCTGAAGCACCTGCGCAA
GGACAACACCGGCTACGACCTGAAGCAGCTCCTGATCGGCGCCGAGGGCACCCTGGGCGTGGTGACGGCGGCGGGCCTGA
AGCTGGTCCCGGTGCTGGACTCCCGCGCGGTCGCCTTCCTGGGGATCGCTTCCCCCGAGGCGGCCATCGAGCTGCTGGCC
CGGGCCAAGGACGCGGCCGGCGGCGCCGTCGAGGCGTTCGAGCTGATGGGCCGGCTCGGCATCGAGTTCGCGGTGAAGAA
CATCGCCGGCACGCGCGACCCGCTGGCCGGCGCCCATCCCTGGTACCTGCTGGCCGAGTTCGCCTCGGCCGAGGAAGGCT
CGGCCGAGCGGGCCATGGAGCGGTTCCTGGCCGATGGCCTGGAGGCGGGCCTGATCGCCGACGCCGTGGTCGCCCAGACG
CAGGCGCAGGCGCAGGCGCTTTGGGCGATCCGCGAGAACCAGTCGCCGGCCCAGAAGCCCGAGGGCGCGACGTGGAAGCA
CGACGTCTCGGTCCCGGTGAGCCAGGTCCCCGCCTTCCTGGCCAAGGCCGACGCGGCGATGCAGGCGTTCGCGCCGGGCT
GCCGGATCGCCGCCTTCGGCCATGTGGGCGACGGCAACATCCACTACGACGTGCTGCGGCCAGACAGCGGATCGGACGTC
GAGCATTCGGCGAGGCGGGATGAAGGCTCGCGGATCGTCCACGATCTGGTGGCGAGCCTCGGCGGCTCGATCAGCGCCGA
GCATGGCCTGGGAGCGATGAAGACGGCCGAAGCCGCGCGCTACAAGAGCCCGGTCGAGCTGGCGGCGCTGAAGGCCGTGC
GGCAGGCGCTGGACCCGGGCCGGATCCTCAATCCGCGGGTTCTGTTCTAG

Upstream 100 bases:

>100_bases
GGCCATCGCCGTCGCGCCGATCCCGCACGAGGGCCTGGGCGAGGCCATCAACGACCGGCTGAAGCGCGCGGCCGGGTTCG
TGGGCTGATATAGTCGCCGC

Downstream 100 bases:

>100_bases
CGCTATTGGCCTTTTGCAGCGGTCCCGCTTATGAGGGCCGAAATGCTGATCGTGCTCTCCCCGGCCAAGGCGCTGGACTT
CGCCCAGCCGCCCGTGCAGG

Product: FAD/FMN-containing dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 468

Protein sequence:

>469_residues
MTAPVPADVISRLKAVLGEGGWSEDPQRIAPKLVEWRDRWVGQTPFLALPKTTFEVAAVVGVCGQAGQPITIQGGNTGLV
GGQIPQGEILLSTERMRAIREVSPLDDVITAEAGVTVAEVHAAAAGVRRRFPLGLASEGSATVGGVVSTNAGGTQVLRYG
STRNLVLGLEAVLPNGEVWNGLKHLRKDNTGYDLKQLLIGAEGTLGVVTAAGLKLVPVLDSRAVAFLGIASPEAAIELLA
RAKDAAGGAVEAFELMGRLGIEFAVKNIAGTRDPLAGAHPWYLLAEFASAEEGSAERAMERFLADGLEAGLIADAVVAQT
QAQAQALWAIRENQSPAQKPEGATWKHDVSVPVSQVPAFLAKADAAMQAFAPGCRIAAFGHVGDGNIHYDVLRPDSGSDV
EHSARRDEGSRIVHDLVASLGGSISAEHGLGAMKTAEAARYKSPVELAALKAVRQALDPGRILNPRVLF

Sequences:

>Translated_469_residues
MTAPVPADVISRLKAVLGEGGWSEDPQRIAPKLVEWRDRWVGQTPFLALPKTTFEVAAVVGVCGQAGQPITIQGGNTGLV
GGQIPQGEILLSTERMRAIREVSPLDDVITAEAGVTVAEVHAAAAGVRRRFPLGLASEGSATVGGVVSTNAGGTQVLRYG
STRNLVLGLEAVLPNGEVWNGLKHLRKDNTGYDLKQLLIGAEGTLGVVTAAGLKLVPVLDSRAVAFLGIASPEAAIELLA
RAKDAAGGAVEAFELMGRLGIEFAVKNIAGTRDPLAGAHPWYLLAEFASAEEGSAERAMERFLADGLEAGLIADAVVAQT
QAQAQALWAIRENQSPAQKPEGATWKHDVSVPVSQVPAFLAKADAAMQAFAPGCRIAAFGHVGDGNIHYDVLRPDSGSDV
EHSARRDEGSRIVHDLVASLGGSISAEHGLGAMKTAEAARYKSPVELAALKAVRQALDPGRILNPRVLF
>Mature_468_residues
TAPVPADVISRLKAVLGEGGWSEDPQRIAPKLVEWRDRWVGQTPFLALPKTTFEVAAVVGVCGQAGQPITIQGGNTGLVG
GQIPQGEILLSTERMRAIREVSPLDDVITAEAGVTVAEVHAAAAGVRRRFPLGLASEGSATVGGVVSTNAGGTQVLRYGS
TRNLVLGLEAVLPNGEVWNGLKHLRKDNTGYDLKQLLIGAEGTLGVVTAAGLKLVPVLDSRAVAFLGIASPEAAIELLAR
AKDAAGGAVEAFELMGRLGIEFAVKNIAGTRDPLAGAHPWYLLAEFASAEEGSAERAMERFLADGLEAGLIADAVVAQTQ
AQAQALWAIRENQSPAQKPEGATWKHDVSVPVSQVPAFLAKADAAMQAFAPGCRIAAFGHVGDGNIHYDVLRPDSGSDVE
HSARRDEGSRIVHDLVASLGGSISAEHGLGAMKTAEAARYKSPVELAALKAVRQALDPGRILNPRVLF

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI119964728, Length=451, Percent_Identity=33.9246119733925, Blast_Score=246, Evalue=2e-65,
Organism=Homo sapiens, GI37595756, Length=424, Percent_Identity=28.0660377358491, Blast_Score=137, Evalue=3e-32,
Organism=Homo sapiens, GI37595754, Length=447, Percent_Identity=26.8456375838926, Blast_Score=126, Evalue=4e-29,
Organism=Escherichia coli, GI1789351, Length=446, Percent_Identity=29.372197309417, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1787977, Length=494, Percent_Identity=24.2914979757085, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI48994914, Length=156, Percent_Identity=32.6923076923077, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17534361, Length=459, Percent_Identity=31.8082788671024, Blast_Score=228, Evalue=7e-60,
Organism=Caenorhabditis elegans, GI71992373, Length=455, Percent_Identity=25.4945054945055, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI71992381, Length=451, Percent_Identity=24.390243902439, Blast_Score=99, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI71992392, Length=402, Percent_Identity=25.3731343283582, Blast_Score=94, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6320023, Length=474, Percent_Identity=34.3881856540084, Blast_Score=296, Evalue=5e-81,
Organism=Saccharomyces cerevisiae, GI6320764, Length=453, Percent_Identity=35.0993377483444, Blast_Score=281, Evalue=1e-76,
Organism=Saccharomyces cerevisiae, GI6320027, Length=490, Percent_Identity=26.1224489795918, Blast_Score=119, Evalue=8e-28,
Organism=Drosophila melanogaster, GI18921117, Length=436, Percent_Identity=33.9449541284404, Blast_Score=244, Evalue=9e-65,
Organism=Drosophila melanogaster, GI24639277, Length=436, Percent_Identity=33.9449541284404, Blast_Score=244, Evalue=9e-65,
Organism=Drosophila melanogaster, GI24639275, Length=436, Percent_Identity=33.9449541284404, Blast_Score=244, Evalue=9e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 48976; Mature: 48845

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPVPADVISRLKAVLGEGGWSEDPQRIAPKLVEWRDRWVGQTPFLALPKTTFEVAAVV
CCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHH
GVCGQAGQPITIQGGNTGLVGGQIPQGEILLSTERMRAIREVSPLDDVITAEAGVTVAEV
HHCCCCCCEEEEECCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCHHHHHHHCCCCHHHHH
HAAAAGVRRRFPLGLASEGSATVGGVVSTNAGGTQVLRYGSTRNLVLGLEAVLPNGEVWN
HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCEEEEEEEECCCCHHHH
GLKHLRKDNTGYDLKQLLIGAEGTLGVVTAAGLKLVPVLDSRAVAFLGIASPEAAIELLA
HHHHHHCCCCCCHHHHHHHCCCCCCCEEECCCEEEEEECCCCCEEEEEECCHHHHHHHHH
RAKDAAGGAVEAFELMGRLGIEFAVKNIAGTRDPLAGAHPWYLLAEFASAEEGSAERAME
HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
RFLADGLEAGLIADAVVAQTQAQAQALWAIRENQSPAQKPEGATWKHDVSVPVSQVPAFL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
AKADAAMQAFAPGCRIAAFGHVGDGNIHYDVLRPDSGSDVEHSARRDEGSRIVHDLVASL
HHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCCCCCHHHHHCCCHHHHHHHHHHHH
GGSISAEHGLGAMKTAEAARYKSPVELAALKAVRQALDPGRILNPRVLF
CCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TAPVPADVISRLKAVLGEGGWSEDPQRIAPKLVEWRDRWVGQTPFLALPKTTFEVAAVV
CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHH
GVCGQAGQPITIQGGNTGLVGGQIPQGEILLSTERMRAIREVSPLDDVITAEAGVTVAEV
HHCCCCCCEEEEECCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCHHHHHHHCCCCHHHHH
HAAAAGVRRRFPLGLASEGSATVGGVVSTNAGGTQVLRYGSTRNLVLGLEAVLPNGEVWN
HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCEEEEEEEECCCCHHHH
GLKHLRKDNTGYDLKQLLIGAEGTLGVVTAAGLKLVPVLDSRAVAFLGIASPEAAIELLA
HHHHHHCCCCCCHHHHHHHCCCCCCCEEECCCEEEEEECCCCCEEEEEECCHHHHHHHHH
RAKDAAGGAVEAFELMGRLGIEFAVKNIAGTRDPLAGAHPWYLLAEFASAEEGSAERAME
HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
RFLADGLEAGLIADAVVAQTQAQAQALWAIRENQSPAQKPEGATWKHDVSVPVSQVPAFL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
AKADAAMQAFAPGCRIAAFGHVGDGNIHYDVLRPDSGSDVEHSARRDEGSRIVHDLVASL
HHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCCCCCHHHHHCCCHHHHHHHHHHHH
GGSISAEHGLGAMKTAEAARYKSPVELAALKAVRQALDPGRILNPRVLF
CCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]