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The map label for this gene is kdtA [H]

Identifier: 197103978

GI number: 197103978

Start: 537564

End: 538826

Strand: Reverse

Name: kdtA [H]

Synonym: PHZ_c0512

Alternate gene names: 197103978

Gene position: 538826-537564 (Counterclockwise)

Preceding gene: 197103979

Following gene: 197103977

Centisome position: 13.48

GC content: 78.15

Gene sequence:

>1263_bases
GTGAAACCCCTCCCCCTCGCGCTCTACGGCGCGGCGACCCGCCTGCTCGAGCCGCTGGCGCCGCAGGTCCTGCAGGCCCG
CGCCCGGCGCGGCAAGGAAGACCCCGCCCGGCTCGCCGAGCGCCTCGGCCGGGCGGCGGCTCCCCGTCCCCCGGGTCCGC
TCGTGTGGCTGCACGGCGTCAGCGTGGGCGAGAGCGCCTCGCTGCTGCCGCTGGTCGCGGCGCTGAGGCGGCGGCGGCCG
GATCTCACCGTCCTCGTCACCTCGGGCACGGTCACCTCGGCCCAGGTGCTGGCGCGGCGCCTGCCCCCGGGCGTGATCCA
CCAGTTCGCCCCCGTCGACGCTCCGGGCGCGGTCGCCCGCTTCCTCGATCACTGGCGTCCGGGCCTCGCCGTGCTGGTCG
AGAGCGAGCTGTGGCCGAACCTGATCCTGGCGGCGAAGGAGCGCGGCGTGCGCCTCGCCCTCGCCTCGGCGCGGATGACC
GAGGCCAGCGCCGCCGGCTGGGCCCGCGCCCCCGCCTCGGCGCGGGCGCTGCTCGGCGCCTTCGACGCCGTCCTGCCGCA
GGACGACGCCACCGCCGCTCGCCTCGCCCGCCTCGGGGCCCGGACCGGCCCGCACCTGAACCTGAAGCGCGCAGGCGATC
CCCTGCCCTGCGACGCGGCCGAGCTGGAGCGCCTGCGGGGGCTCCTCGCCGGACGCCCGGTGGTCCTGGCGGCCAGCACC
CATCCGGGCGAGGAGCCGATCCTCGCCGCGGCCGTCCGCGCCGCCGCGCCCGACGCCCTGACGATCATCGCCCCGCGCCA
TCCCGAGCGGGGCGGCGCCCTGGCGGCCGAACTCGCCGCGCCGCGCCGCGGGGCGGGCGAGCTTCCGAAGCCGGACGACG
CGCTCTACGTGGCCGACACCCTGGGCGAACTCGGCCTCTTCTTCCGCCTGGCCGATGTGGTGGTGATGGGCGGCAGCTTC
CGGCCGGGAATCGGCGGGCACAATCCGCTGGAGCCCGCCCGCCTGGGCTGCGCGATCCTCACCGGGCCGCACGTGTTCAA
CGCCGCCGACCTCTACGCCGAGATGTCGGACGCCGGCGCGGCCATCGTCCTGACCGGCCCGGACGCCCTTCAGGCCGAGC
TCCGCCGCCTGCTGGGCGCCGCCCCGACCCGCGAGACCCCGACCCGCGAAGCCCTGGGACGGGCCGCCCTCGCCTACGCC
GAGCGGCAGGGCGCCCAGCTCGACGCCGCCTTCGCCGTCCTCGATCCCCTGCTGCCCGCATGA

Upstream 100 bases:

>100_bases
CCTGCGAGGGCCTGGAGCGCCGCTTCCGCATCGGCCACGCCACCCTGCAGGTGGAGACCGACGGCGCTCACGCCTGCCGG
CTGGCCCCCGCCGAGGTGGT

Downstream 100 bases:

>100_bases
AACTGGCGACCCCCCGCTGGTGGTACGAGCGCGACCGGCGCTCCATGCCGATGACCCGGGCGCTGCTCACGCCGCTGTCC
TGGGCCTGGGCCGGCGTGAC

Product: 3-deoxy-D-manno-octulosonic-acid transferase

Products: NA

Alternate protein names: KDO transferase [H]

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MKPLPLALYGAATRLLEPLAPQVLQARARRGKEDPARLAERLGRAAAPRPPGPLVWLHGVSVGESASLLPLVAALRRRRP
DLTVLVTSGTVTSAQVLARRLPPGVIHQFAPVDAPGAVARFLDHWRPGLAVLVESELWPNLILAAKERGVRLALASARMT
EASAAGWARAPASARALLGAFDAVLPQDDATAARLARLGARTGPHLNLKRAGDPLPCDAAELERLRGLLAGRPVVLAAST
HPGEEPILAAAVRAAAPDALTIIAPRHPERGGALAAELAAPRRGAGELPKPDDALYVADTLGELGLFFRLADVVVMGGSF
RPGIGGHNPLEPARLGCAILTGPHVFNAADLYAEMSDAGAAIVLTGPDALQAELRRLLGAAPTRETPTREALGRAALAYA
ERQGAQLDAAFAVLDPLLPA

Sequences:

>Translated_420_residues
MKPLPLALYGAATRLLEPLAPQVLQARARRGKEDPARLAERLGRAAAPRPPGPLVWLHGVSVGESASLLPLVAALRRRRP
DLTVLVTSGTVTSAQVLARRLPPGVIHQFAPVDAPGAVARFLDHWRPGLAVLVESELWPNLILAAKERGVRLALASARMT
EASAAGWARAPASARALLGAFDAVLPQDDATAARLARLGARTGPHLNLKRAGDPLPCDAAELERLRGLLAGRPVVLAAST
HPGEEPILAAAVRAAAPDALTIIAPRHPERGGALAAELAAPRRGAGELPKPDDALYVADTLGELGLFFRLADVVVMGGSF
RPGIGGHNPLEPARLGCAILTGPHVFNAADLYAEMSDAGAAIVLTGPDALQAELRRLLGAAPTRETPTREALGRAALAYA
ERQGAQLDAAFAVLDPLLPA
>Mature_420_residues
MKPLPLALYGAATRLLEPLAPQVLQARARRGKEDPARLAERLGRAAAPRPPGPLVWLHGVSVGESASLLPLVAALRRRRP
DLTVLVTSGTVTSAQVLARRLPPGVIHQFAPVDAPGAVARFLDHWRPGLAVLVESELWPNLILAAKERGVRLALASARMT
EASAAGWARAPASARALLGAFDAVLPQDDATAARLARLGARTGPHLNLKRAGDPLPCDAAELERLRGLLAGRPVVLAAST
HPGEEPILAAAVRAAAPDALTIIAPRHPERGGALAAELAAPRRGAGELPKPDDALYVADTLGELGLFFRLADVVVMGGSF
RPGIGGHNPLEPARLGCAILTGPHVFNAADLYAEMSDAGAAIVLTGPDALQAELRRLLGAAPTRETPTREALGRAALAYA
ERQGAQLDAAFAVLDPLLPA

Specific function: Essential step in lipopolysaccharides biosynthesis. Acts at transfer of 3-deoxy-D-mono octulonic acid (KDO) from CMP-KDO to a tetraacyldisaccharide 1,4'-bisphosphate precursor of lipid A (lipid IVA) [H]

COG id: COG1519

COG function: function code M; 3-deoxy-D-manno-octulosonic-acid transferase

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

Organism=Escherichia coli, GI1790064, Length=424, Percent_Identity=37.5, Blast_Score=223, Evalue=3e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007507 [H]

Pfam domain/function: PF04413 Glycos_transf_N [H]

EC number: 2.-.-.-

Molecular weight: Translated: 43740; Mature: 43740

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLPLALYGAATRLLEPLAPQVLQARARRGKEDPARLAERLGRAAAPRPPGPLVWLHGV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEEECC
SVGESASLLPLVAALRRRRPDLTVLVTSGTVTSAQVLARRLPPGVIHQFAPVDAPGAVAR
CCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCHHHHHHCCCCCCCHHHHH
FLDHWRPGLAVLVESELWPNLILAAKERGVRLALASARMTEASAAGWARAPASARALLGA
HHHHCCCCEEEEEECCCCCHHHHHHHCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHH
FDAVLPQDDATAARLARLGARTGPHLNLKRAGDPLPCDAAELERLRGLLAGRPVVLAAST
HHHHCCCCCHHHHHHHHHHCCCCCCEEHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEECC
HPGEEPILAAAVRAAAPDALTIIAPRHPERGGALAAELAAPRRGAGELPKPDDALYVADT
CCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEHHH
LGELGLFFRLADVVVMGGSFRPGIGGHNPLEPARLGCAILTGPHVFNAADLYAEMSDAGA
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCEEEEECCCCCCHHHHHHHHCCCCC
AIVLTGPDALQAELRRLLGAAPTRETPTREALGRAALAYAERQGAQLDAAFAVLDPLLPA
EEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MKPLPLALYGAATRLLEPLAPQVLQARARRGKEDPARLAERLGRAAAPRPPGPLVWLHGV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEEECC
SVGESASLLPLVAALRRRRPDLTVLVTSGTVTSAQVLARRLPPGVIHQFAPVDAPGAVAR
CCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCHHHHHHCCCCCCCHHHHH
FLDHWRPGLAVLVESELWPNLILAAKERGVRLALASARMTEASAAGWARAPASARALLGA
HHHHCCCCEEEEEECCCCCHHHHHHHCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHH
FDAVLPQDDATAARLARLGARTGPHLNLKRAGDPLPCDAAELERLRGLLAGRPVVLAAST
HHHHCCCCCHHHHHHHHHHCCCCCCEEHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEECC
HPGEEPILAAAVRAAAPDALTIIAPRHPERGGALAAELAAPRRGAGELPKPDDALYVADT
CCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEHHH
LGELGLFFRLADVVVMGGSFRPGIGGHNPLEPARLGCAILTGPHVFNAADLYAEMSDAGA
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCEEEEECCCCCCHHHHHHHHCCCCC
AIVLTGPDALQAELRRLLGAAPTRETPTREALGRAALAYAERQGAQLDAAFAVLDPLLPA
EEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Transferring phosphorus-containing groups [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA