| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is 197103791
Identifier: 197103791
GI number: 197103791
Start: 319983
End: 320861
Strand: Direct
Name: 197103791
Synonym: PHZ_c0325
Alternate gene names: NA
Gene position: 319983-320861 (Clockwise)
Preceding gene: 197103790
Following gene: 197103794
Centisome position: 8.01
GC content: 69.74
Gene sequence:
>879_bases ATGACGCGCAAGCTCTCCGTCGCCGCCATCCAGACCTCGTACGGCCAGGACATGGCGGCCAACATCGCCAAGACCGAAGG CTTCATCCGCCAGGCCGCGGCCGACGGCGCCCAGGTGATCCTCCCCTCCGAGCTGTTCCAGGGGCCCTACTTCTGCGTGG CCCAGGAGGAGCGCTGGTTCGCCACCGCCTATCCCTGGCGCGAGCATCCGTGCGTCACCGCGCTGGCGCCGCTGGCCAAG GAGCTGGGCGTCGTGCTGCCGATCTCGATCTTCGAGCGCGAGGGGCCGCACTACTTCAACAGCCTGGTGATGGTGGACGC CGACGGCTCGCTGATGGGCGTCTATCGCAAGAGCCACATCCCCGACGGACCGGGCTACATGGAGAAGTACTACTTCCGGC CCGGCGACACCGGCTTCAAGGTCTGGGAGACGAAGTTCGGGCGCATCGGCGTCGGCATCTGCTGGGACCAGTGGTACCCC GAGGCCGCCCGCGCCATGACCCTGATGGGCGCCGAGGTCTTGCTCTATCCCACCGCCATCGGCTCCGAGCCGCACGACGC CACCCTGGACACCGCCGCCCCCTGGCGCCGGGCGATGCAGGGCCACGCGGTCTCGAACGTGATCCCGGTGGTGGGCGCCA ACCGCACGGGCTTCGAGCCGTGGGACGGCTATCCGAACGGCGGCCAGGAGTTCTACGGCTCCAGCTTCATCGCCGACCAC CGGGGCGACCTCGTCGCCGCCTTCGGGCGCGAGGACGAGGGGGTGCTGAAGGCCGAGTTCGACCTCGACTTCCTGGCGAC CCACCGCGCCGCCTGGGGCTTCTTCCGCGACCGCCGCACCGACCTCTATGGGTCGCTGGTGAACGGCCGGCCCGCGTAA
Upstream 100 bases:
>100_bases AGCTGTTCCCCGGCCGCGCGATCGTCGGCCTTCCGTCGCTCGCCATTCTGACCGGCGGCGGGTCCTTCCACTGCATCACC CAGCAGGAGCCCGCCCTCTG
Downstream 100 bases:
>100_bases GTCGTCTCCTCTCCCCTCCGACTACGCCTCGGGGGAGAGGAGAGGGGGATCAGCAGCCCGTCGCGGCGGGCGCGCCGGCC AGTTCCTGCTTGGCCTCCGC
Product: hydrolase, carbon-nitrogen family
Products: NA
Alternate protein names: D-N-alpha-carbamilase [H]
Number of amino acids: Translated: 292; Mature: 291
Protein sequence:
>292_residues MTRKLSVAAIQTSYGQDMAANIAKTEGFIRQAAADGAQVILPSELFQGPYFCVAQEERWFATAYPWREHPCVTALAPLAK ELGVVLPISIFEREGPHYFNSLVMVDADGSLMGVYRKSHIPDGPGYMEKYYFRPGDTGFKVWETKFGRIGVGICWDQWYP EAARAMTLMGAEVLLYPTAIGSEPHDATLDTAAPWRRAMQGHAVSNVIPVVGANRTGFEPWDGYPNGGQEFYGSSFIADH RGDLVAAFGREDEGVLKAEFDLDFLATHRAAWGFFRDRRTDLYGSLVNGRPA
Sequences:
>Translated_292_residues MTRKLSVAAIQTSYGQDMAANIAKTEGFIRQAAADGAQVILPSELFQGPYFCVAQEERWFATAYPWREHPCVTALAPLAK ELGVVLPISIFEREGPHYFNSLVMVDADGSLMGVYRKSHIPDGPGYMEKYYFRPGDTGFKVWETKFGRIGVGICWDQWYP EAARAMTLMGAEVLLYPTAIGSEPHDATLDTAAPWRRAMQGHAVSNVIPVVGANRTGFEPWDGYPNGGQEFYGSSFIADH RGDLVAAFGREDEGVLKAEFDLDFLATHRAAWGFFRDRRTDLYGSLVNGRPA >Mature_291_residues TRKLSVAAIQTSYGQDMAANIAKTEGFIRQAAADGAQVILPSELFQGPYFCVAQEERWFATAYPWREHPCVTALAPLAKE LGVVLPISIFEREGPHYFNSLVMVDADGSLMGVYRKSHIPDGPGYMEKYYFRPGDTGFKVWETKFGRIGVGICWDQWYPE AARAMTLMGAEVLLYPTAIGSEPHDATLDTAAPWRRAMQGHAVSNVIPVVGANRTGFEPWDGYPNGGQEFYGSSFIADHR GDLVAAFGREDEGVLKAEFDLDFLATHRAAWGFFRDRRTDLYGSLVNGRPA
Specific function: The enzyme catalyzes the hydrolysis of N-carbamoyl-D- amino acids to the corresponding which are useful intermediates in the preparation of beta-lactam antibiotics. Industrial production of beta-lactam antibiotics is now being developed using this enzyme
COG id: COG0388
COG function: function code R; Predicted amidohydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 CN hydrolase domain [H]
Homologues:
Organism=Homo sapiens, GI7706509, Length=284, Percent_Identity=26.4084507042254, Blast_Score=105, Evalue=7e-23, Organism=Homo sapiens, GI9910460, Length=290, Percent_Identity=28.2758620689655, Blast_Score=102, Evalue=5e-22, Organism=Homo sapiens, GI5031947, Length=291, Percent_Identity=28.1786941580756, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI297632350, Length=291, Percent_Identity=28.1786941580756, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI297632348, Length=291, Percent_Identity=28.1786941580756, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI297632346, Length=187, Percent_Identity=28.3422459893048, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17533173, Length=309, Percent_Identity=31.7152103559871, Blast_Score=127, Evalue=9e-30, Organism=Caenorhabditis elegans, GI17556280, Length=299, Percent_Identity=25.752508361204, Blast_Score=88, Evalue=4e-18, Organism=Saccharomyces cerevisiae, GI6323383, Length=298, Percent_Identity=28.1879194630872, Blast_Score=108, Evalue=1e-24, Organism=Saccharomyces cerevisiae, GI6322335, Length=318, Percent_Identity=25.1572327044025, Blast_Score=78, Evalue=2e-15, Organism=Drosophila melanogaster, GI21358471, Length=306, Percent_Identity=30.718954248366, Blast_Score=126, Evalue=1e-29, Organism=Drosophila melanogaster, GI17933642, Length=202, Percent_Identity=28.2178217821782, Blast_Score=72, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003010 [H]
Pfam domain/function: PF00795 CN_hydrolase [H]
EC number: =3.5.1.77 [H]
Molecular weight: Translated: 32361; Mature: 32230
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: PS50263 CN_HYDROLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRKLSVAAIQTSYGQDMAANIAKTEGFIRQAAADGAQVILPSELFQGPYFCVAQEERWF CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEECHHHHCCCEEEEECCCCEE ATAYPWREHPCVTALAPLAKELGVVLPISIFEREGPHYFNSLVMVDADGSLMGVYRKSHI EEECCCCCCCHHHHHHHHHHHCCEEEEEHHHCCCCCCHHCEEEEEECCCCEEEEEHHCCC PDGPGYMEKYYFRPGDTGFKVWETKFGRIGVGICWDQWYPEAARAMTLMGAEVLLYPTAI CCCCCHHHHEEECCCCCCCEEEEECCCEEEEEEECCCCCCHHHHHHHHCCCEEEEEEECC GSEPHDATLDTAAPWRRAMQGHAVSNVIPVVGANRTGFEPWDGYPNGGQEFYGSSFIADH CCCCCCCCCCCHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCCCCHHHCCCCEEECC RGDLVAAFGREDEGVLKAEFDLDFLATHRAAWGFFRDRRTDLYGSLVNGRPA CCCEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure TRKLSVAAIQTSYGQDMAANIAKTEGFIRQAAADGAQVILPSELFQGPYFCVAQEERWF CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEECHHHHCCCEEEEECCCCEE ATAYPWREHPCVTALAPLAKELGVVLPISIFEREGPHYFNSLVMVDADGSLMGVYRKSHI EEECCCCCCCHHHHHHHHHHHCCEEEEEHHHCCCCCCHHCEEEEEECCCCEEEEEHHCCC PDGPGYMEKYYFRPGDTGFKVWETKFGRIGVGICWDQWYPEAARAMTLMGAEVLLYPTAI CCCCCHHHHEEECCCCCCCEEEEECCCEEEEEEECCCCCCHHHHHHHHCCCEEEEEEECC GSEPHDATLDTAAPWRRAMQGHAVSNVIPVVGANRTGFEPWDGYPNGGQEFYGSSFIADH CCCCCCCCCCCHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCCCCHHHCCCCEEECC RGDLVAAFGREDEGVLKAEFDLDFLATHRAAWGFFRDRRTDLYGSLVNGRPA CCCEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9648217; 10903946 [H]