| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is 197103773
Identifier: 197103773
GI number: 197103773
Start: 300868
End: 301662
Strand: Direct
Name: 197103773
Synonym: PHZ_c0307
Alternate gene names: NA
Gene position: 300868-301662 (Clockwise)
Preceding gene: 197103772
Following gene: 197103777
Centisome position: 7.53
GC content: 73.71
Gene sequence:
>795_bases GTGACCATCCGGTTGGCGCACCTCTCGGACATCCATTTCGGAGGCGAGAACCCCGAGGCCGTCGCCGCGGCGGCCGACAT GCTGCGCGGCGAGCGCTTCGACCTCGTGGTCGTCTCGGGGGACCTCACCCGCTACGGCGAGGCCTGGGAGTTCGAGCAGG CCAAGGCCTGGCTGGACGGCCTGCCCGAGCAGCGGCTGGTGACCCCGGGCAACCACGACGCCCCCTACCTTGCCTGGGCC GAGCGGATCTTCGCCCCCTTCCGCCGCTTCGAGCGCTGGATCGGCGCCGCCCCGGCCCAGACCTGGCTCGCCCCCGGCGT CGCCGTGCGCGGCATCAACACCGCCCGCGGCGCCCAGCCCCGGCTGAACTGGTCCAAGGGCCAGATCGCGCGTCGCCAGG CCGAGGAGGCCGCGGCCTGGTTTGATACGGCGCCGCCCGACGCCGTCCGGATCGTGGTCGTGCACCATCCGCTGATCGAG ATGCTGGGCGGGCCGATGACGGCGAGGGTCTGGGGCGGCGAGGCGGCGGCCGCGGCGTTCGCCGGGGCCAAGGTGGACCT CGTCCTTTCGGGCCACATCCATGCGCCCTTCACCTGGCCCTACCCCTATGGCGACGGGCGAACCTATGCGGTGGGCGCGG GCACGCTGTCGGTGCGCGAGCGGGGCGTGCCGCCCGGCTTCAACATCGTCGAGGTGGAGGCGGACTGTTTCCGGGTCACC GCCCTGGCCTGGACCGGCTCGCGCTACGAGCCGTTCCGGACCTGGGCGCTCGATCGGCGCGCGGCGGCGCCTTAG
Upstream 100 bases:
>100_bases GGTGCTCGACGGGGAGTCCGTGCGGCTGAAGGCGGTCACCGAGGTCCGCTACGAGCCGGCGGTCGCCCGCATCCTCGCGA TTCCGAAGGACGTCTGAGCC
Downstream 100 bases:
>100_bases GCGGGTTCCTTAAGGCAGCGGGCCTGCGCCGCGTCCCCGGACGAAGTGCATCACGATCGAAACCAGGAACAGCACCAGGA AGACGACGAACAGGATCTTG
Product: 3',5'-cyclic-nucleotide phosphodiesterase
Products: NA
Alternate protein names: Phosphohydrolase; 3 5'-Cyclic-Nucleotide Phosphodiesterase; DNA Repair Exonuclease; Ser/Thr Protein Phosphatase Family Protein; 3 5'-Cyclic-Nucleotide Phosphodiesterase CpdA-Like Protein; 3 5-Cyclic-Nucleotide Phosphodiesterase CpdA-Like Protein; Metallo-Phosphoesterase; Calcineurin-Like Phosphoesterase Family; Transcriptional Regulator Icc Related Protein; Metallophosphoesterase Protein; Phosphodiesterase
Number of amino acids: Translated: 264; Mature: 263
Protein sequence:
>264_residues MTIRLAHLSDIHFGGENPEAVAAAADMLRGERFDLVVVSGDLTRYGEAWEFEQAKAWLDGLPEQRLVTPGNHDAPYLAWA ERIFAPFRRFERWIGAAPAQTWLAPGVAVRGINTARGAQPRLNWSKGQIARRQAEEAAAWFDTAPPDAVRIVVVHHPLIE MLGGPMTARVWGGEAAAAAFAGAKVDLVLSGHIHAPFTWPYPYGDGRTYAVGAGTLSVRERGVPPGFNIVEVEADCFRVT ALAWTGSRYEPFRTWALDRRAAAP
Sequences:
>Translated_264_residues MTIRLAHLSDIHFGGENPEAVAAAADMLRGERFDLVVVSGDLTRYGEAWEFEQAKAWLDGLPEQRLVTPGNHDAPYLAWA ERIFAPFRRFERWIGAAPAQTWLAPGVAVRGINTARGAQPRLNWSKGQIARRQAEEAAAWFDTAPPDAVRIVVVHHPLIE MLGGPMTARVWGGEAAAAAFAGAKVDLVLSGHIHAPFTWPYPYGDGRTYAVGAGTLSVRERGVPPGFNIVEVEADCFRVT ALAWTGSRYEPFRTWALDRRAAAP >Mature_263_residues TIRLAHLSDIHFGGENPEAVAAAADMLRGERFDLVVVSGDLTRYGEAWEFEQAKAWLDGLPEQRLVTPGNHDAPYLAWAE RIFAPFRRFERWIGAAPAQTWLAPGVAVRGINTARGAQPRLNWSKGQIARRQAEEAAAWFDTAPPDAVRIVVVHHPLIEM LGGPMTARVWGGEAAAAAFAGAKVDLVLSGHIHAPFTWPYPYGDGRTYAVGAGTLSVRERGVPPGFNIVEVEADCFRVTA LAWTGSRYEPFRTWALDRRAAAP
Specific function: Unknown
COG id: COG1409
COG function: function code R; Predicted phosphohydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28906; Mature: 28775
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIRLAHLSDIHFGGENPEAVAAAADMLRGERFDLVVVSGDLTRYGEAWEFEQAKAWLDG CEEEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCHHCCCCCCHHHHHHHHHC LPEQRLVTPGNHDAPYLAWAERIFAPFRRFERWIGAAPAQTWLAPGVAVRGINTARGAQP CCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEECCCCCCCCCC RLNWSKGQIARRQAEEAAAWFDTAPPDAVRIVVVHHPLIEMLGGPMTARVWGGEAAAAAF CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHCCCEEEEEECCCHHHHHH AGAKVDLVLSGHIHAPFTWPYPYGDGRTYAVGAGTLSVRERGVPPGFNIVEVEADCFRVT CCCEEEEEEECCCCCCEECCCCCCCCEEEEEECCEEEHHHCCCCCCCCEEEEECCEEEEE ALAWTGSRYEPFRTWALDRRAAAP EEEECCCCCCCHHHHHHCHHCCCC >Mature Secondary Structure TIRLAHLSDIHFGGENPEAVAAAADMLRGERFDLVVVSGDLTRYGEAWEFEQAKAWLDG EEEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCHHCCCCCCHHHHHHHHHC LPEQRLVTPGNHDAPYLAWAERIFAPFRRFERWIGAAPAQTWLAPGVAVRGINTARGAQP CCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEECCCCCCCCCC RLNWSKGQIARRQAEEAAAWFDTAPPDAVRIVVVHHPLIEMLGGPMTARVWGGEAAAAAF CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHCCCEEEEEECCCHHHHHH AGAKVDLVLSGHIHAPFTWPYPYGDGRTYAVGAGTLSVRERGVPPGFNIVEVEADCFRVT CCCEEEEEEECCCCCCEECCCCCCCCEEEEEECCEEEHHHCCCCCCCCEEEEECCEEEEE ALAWTGSRYEPFRTWALDRRAAAP EEEECCCCCCCHHHHHHCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA