Click here to switch to the map view.

The map label for this gene is rpoE [H]

Identifier: 197103767

GI number: 197103767

Start: 295703

End: 296299

Strand: Reverse

Name: rpoE [H]

Synonym: PHZ_c0301

Alternate gene names: 197103767

Gene position: 296299-295703 (Counterclockwise)

Preceding gene: 197103768

Following gene: 197103766

Centisome position: 7.41

GC content: 71.52

Gene sequence:

>597_bases
ATGGCCGCTCCCGACGAGACGAAACCTCGCACCGACGACGAGGCCTTCAAGCGTGAGCTGGTGCAGCTCATCCCGCACCT
GCGCGCCTTCGCCCGCACGCTGTGCGGCGATCCCGCCGCGGCCGACGACCTGGCGCAGGACGCCATGATGAAGGCCTGGG
ACGCGCGCCAGAGCTTCCAGATGGGCACCAACATGAAGGCCTGGACCTTCATGATCCTCCGCAACCAGTTCTATTCCGAG
AAGCGCCGCTCGTGGCGGCAGAGCCAGCTCGACCAGGAGGCCGCCGAGCGGACCCTGGTGGCCGTGGACGATCCCGAGGC
CCCGGTGGCCCTGGACGAGCTGCGGCAGGGCCTGGCCATGCTCCCGCCGGAACAGCGCGAGGCGCTGATCCTGGTGGGCG
CCGGCGGCTTCGCCTACGAGGAGGCCGCCGACATCTGCGGCTGCGCCGTGGGCACGGTGAAGAGCCGGGTCAGCCGCGCC
CGGCGCGCGCTGCACGCGATCCTGGACGAGGGCGCGTACGACCGCGACGGCGCCGCCGCCAGCGACGCCATGCGCTCTAT
CCTGGCGGATGCGGAGCGGCTAAGCACCGTCCGGTAA

Upstream 100 bases:

>100_bases
GCCTGCGCCAGATGTTCGACGAGGTGGTCAACGAGAAGGTTCCGGACGAGTTCCTGGACATCCTCCGGCGCGCCGACGAA
CGCGGAGCGGGGAACGACTG

Downstream 100 bases:

>100_bases
GGGACGGATCAGGCCGTTGAAACTCCGCCTGTCCAAGGGATCGCTGAGCACGATCCGGGTCCGCCTGATCGCGGCCCTGG
CGGCTGCGCTGCTGCCCGTG

Product: RNA polymerase sigma-70 factor, ECF subfamily

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MAAPDETKPRTDDEAFKRELVQLIPHLRAFARTLCGDPAAADDLAQDAMMKAWDARQSFQMGTNMKAWTFMILRNQFYSE
KRRSWRQSQLDQEAAERTLVAVDDPEAPVALDELRQGLAMLPPEQREALILVGAGGFAYEEAADICGCAVGTVKSRVSRA
RRALHAILDEGAYDRDGAAASDAMRSILADAERLSTVR

Sequences:

>Translated_198_residues
MAAPDETKPRTDDEAFKRELVQLIPHLRAFARTLCGDPAAADDLAQDAMMKAWDARQSFQMGTNMKAWTFMILRNQFYSE
KRRSWRQSQLDQEAAERTLVAVDDPEAPVALDELRQGLAMLPPEQREALILVGAGGFAYEEAADICGCAVGTVKSRVSRA
RRALHAILDEGAYDRDGAAASDAMRSILADAERLSTVR
>Mature_197_residues
AAPDETKPRTDDEAFKRELVQLIPHLRAFARTLCGDPAAADDLAQDAMMKAWDARQSFQMGTNMKAWTFMILRNQFYSEK
RRSWRQSQLDQEAAERTLVAVDDPEAPVALDELRQGLAMLPPEQREALILVGAGGFAYEEAADICGCAVGTVKSRVSRAR
RALHAILDEGAYDRDGAAASDAMRSILADAERLSTVR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=135, Percent_Identity=34.0740740740741, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21900; Mature: 21769

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAPDETKPRTDDEAFKRELVQLIPHLRAFARTLCGDPAAADDLAQDAMMKAWDARQSFQ
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
MGTNMKAWTFMILRNQFYSEKRRSWRQSQLDQEAAERTLVAVDDPEAPVALDELRQGLAM
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHC
LPPEQREALILVGAGGFAYEEAADICGCAVGTVKSRVSRARRALHAILDEGAYDRDGAAA
CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
SDAMRSILADAERLSTVR
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AAPDETKPRTDDEAFKRELVQLIPHLRAFARTLCGDPAAADDLAQDAMMKAWDARQSFQ
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
MGTNMKAWTFMILRNQFYSEKRRSWRQSQLDQEAAERTLVAVDDPEAPVALDELRQGLAM
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHC
LPPEQREALILVGAGGFAYEEAADICGCAVGTVKSRVSRARRALHAILDEGAYDRDGAAA
CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
SDAMRSILADAERLSTVR
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]