Click here to switch to the map view.

The map label for this gene is alr [H]

Identifier: 197103527

GI number: 197103527

Start: 55361

End: 56509

Strand: Reverse

Name: alr [H]

Synonym: PHZ_c0061

Alternate gene names: 197103527

Gene position: 56509-55361 (Counterclockwise)

Preceding gene: 197103530

Following gene: 197103526

Centisome position: 1.41

GC content: 76.15

Gene sequence:

>1149_bases
ATGACCGCAACCCCTGCCACCCCTGCCGACGGCGCGACGCTGTGGATCGACCTCTCGGCGGTCCGCGAGAACTTCCGCGC
GCTCGCGCGGCATGCGGCGCCCGCGCGCCTGGCCGCGGTGGTGAAGGCCGACGCCTACGGCCTGGGGGCGGGGCCGGTTT
CCGAGGCGCTGGCGGCCGAGGGCTGCCGCGACTTCTTCGTCGCCCACCTCTCTGAGGCCCTGGAGCTGAAGCCGGTCCTG
CCCGAGGACGCGCGGCTCTACGTGCTGAACGGCCTGGCGGCCGGCCGCGAGCCGGCCTGCGCCGCGGCCGGCGTCCTCCC
CGTGCTCAATTCCCTCGATCAGGCCGAACGCTGGTCGCGCCTGGCTCCCGACGGCGGCGCCGCGCCGCCCGCGGTGCTGC
AGATCGACAGCGGCATGTCGCGCCTGGGCCTGCCCGAGGCCGAGGTCCGGCGCCTCGCCGGCGACGCCGACCTGCTGGGG
CGCCTGCGCATCGACCTGCTGATGAGCCACCTCGCCTGCGCCGACGAGCCGGACCATCCCGCCAACGCCGCCCAGGCCGA
GGCGTTCGACCGGCTGGCGGCCGCACTGCCCGACTGGCCCCGGTCGCTCGCCAATTCCCACGGCGCCCTGCTGGGCCCGC
GCTTCCGCCACCAGCTCGTGCGCTCGGGCGTCTTCCTGTTCGGCGGGGTCCGCTCGCAGGTCCTCTCGCCCAGGCCCGTG
GTGCGGCTGACCGCCCCGGTCGTCCAGGTGCGCGACGTGCCCGCCGGCGCCGGCGTCGGCTACGGCTTCGCCCATGTGAC
GCGGGCGCCGGCGCGGATCGCCACGGTCGCCCTCGGCTACGCCGACGGCTGGTCCTGGAATCTCGCCGAAGGCTGGCCCG
CCCTCTTCGACGGCCAGACCCTGCCGGTCGCCGGCCGCGTCTCGATGGACAGCATCACCCTCGACGTCACCGCCTTCGAG
GCGGCGGGCGGGCGCCTGCAGCCGGGCGACGAGGTGGAGTTCCTGGGGGCCGGCCGCGACATCGTCGACGCCGCCGAAGC
GGCGGGCACGATCCCCTACGAGATCCTCACGCGCATGGGCCGGCGCCTGCAGCGCCGCTACGTCGGCGGGCCGGGGCCCC
TGCGCCAACAAGGAGCAGCGTCCCGATGA

Upstream 100 bases:

>100_bases
TCGCCTGAAGTTCACCTAGGCCTGCAATTTAGCATTTTATTCGAACAATGGGCGGCTCATTCGAACACCGGGGCGGTAAA
CTGCGTTACAGGCGCAATCC

Downstream 100 bases:

>100_bases
AGGTTGTGGTGCTGGGCGCCGGCGTGATCGGCGTGACGACCGCCTGGTATCTGGCCAAGGCCGGCCACGAGGTGGTGGTC
CTGGAGCGCCAGGACGGCGC

Product: alanine racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MTATPATPADGATLWIDLSAVRENFRALARHAAPARLAAVVKADAYGLGAGPVSEALAAEGCRDFFVAHLSEALELKPVL
PEDARLYVLNGLAAGREPACAAAGVLPVLNSLDQAERWSRLAPDGGAAPPAVLQIDSGMSRLGLPEAEVRRLAGDADLLG
RLRIDLLMSHLACADEPDHPANAAQAEAFDRLAAALPDWPRSLANSHGALLGPRFRHQLVRSGVFLFGGVRSQVLSPRPV
VRLTAPVVQVRDVPAGAGVGYGFAHVTRAPARIATVALGYADGWSWNLAEGWPALFDGQTLPVAGRVSMDSITLDVTAFE
AAGGRLQPGDEVEFLGAGRDIVDAAEAAGTIPYEILTRMGRRLQRRYVGGPGPLRQQGAASR

Sequences:

>Translated_382_residues
MTATPATPADGATLWIDLSAVRENFRALARHAAPARLAAVVKADAYGLGAGPVSEALAAEGCRDFFVAHLSEALELKPVL
PEDARLYVLNGLAAGREPACAAAGVLPVLNSLDQAERWSRLAPDGGAAPPAVLQIDSGMSRLGLPEAEVRRLAGDADLLG
RLRIDLLMSHLACADEPDHPANAAQAEAFDRLAAALPDWPRSLANSHGALLGPRFRHQLVRSGVFLFGGVRSQVLSPRPV
VRLTAPVVQVRDVPAGAGVGYGFAHVTRAPARIATVALGYADGWSWNLAEGWPALFDGQTLPVAGRVSMDSITLDVTAFE
AAGGRLQPGDEVEFLGAGRDIVDAAEAAGTIPYEILTRMGRRLQRRYVGGPGPLRQQGAASR
>Mature_381_residues
TATPATPADGATLWIDLSAVRENFRALARHAAPARLAAVVKADAYGLGAGPVSEALAAEGCRDFFVAHLSEALELKPVLP
EDARLYVLNGLAAGREPACAAAGVLPVLNSLDQAERWSRLAPDGGAAPPAVLQIDSGMSRLGLPEAEVRRLAGDADLLGR
LRIDLLMSHLACADEPDHPANAAQAEAFDRLAAALPDWPRSLANSHGALLGPRFRHQLVRSGVFLFGGVRSQVLSPRPVV
RLTAPVVQVRDVPAGAGVGYGFAHVTRAPARIATVALGYADGWSWNLAEGWPALFDGQTLPVAGRVSMDSITLDVTAFEA
AGGRLQPGDEVEFLGAGRDIVDAAEAAGTIPYEILTRMGRRLQRRYVGGPGPLRQQGAASR

Specific function: Provides the D-alanine required for cell wall biosynthesis [H]

COG id: COG0787

COG function: function code M; Alanine racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alanine racemase family [H]

Homologues:

Organism=Escherichia coli, GI1790487, Length=381, Percent_Identity=32.0209973753281, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1787439, Length=363, Percent_Identity=31.6804407713499, Blast_Score=123, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000821
- InterPro:   IPR009006
- InterPro:   IPR011079
- InterPro:   IPR001608
- InterPro:   IPR020622 [H]

Pfam domain/function: PF00842 Ala_racemase_C; PF01168 Ala_racemase_N [H]

EC number: =5.1.1.1 [H]

Molecular weight: Translated: 40074; Mature: 39943

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS00395 ALANINE_RACEMASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATPATPADGATLWIDLSAVRENFRALARHAAPARLAAVVKADAYGLGAGPVSEALAAE
CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHH
GCRDFFVAHLSEALELKPVLPEDARLYVLNGLAAGREPACAAAGVLPVLNSLDQAERWSR
HHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LAPDGGAAPPAVLQIDSGMSRLGLPEAEVRRLAGDADLLGRLRIDLLMSHLACADEPDHP
CCCCCCCCCCEEEEECCCHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC
ANAAQAEAFDRLAAALPDWPRSLANSHGALLGPRFRHQLVRSGVFLFGGVRSQVLSPRPV
CCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHCCHHEECCHHHHHCCCCCC
VRLTAPVVQVRDVPAGAGVGYGFAHVTRAPARIATVALGYADGWSWNLAEGWPALFDGQT
EEEECCEEEEECCCCCCCCCCCHHHHHCCCHHHHHEEEECCCCCCCCCCCCCCHHCCCCC
LPVAGRVSMDSITLDVTAFEAAGGRLQPGDEVEFLGAGRDIVDAAEAAGTIPYEILTRMG
CCEECCEEECEEEEEEEEEECCCCCCCCCCCEEEEECCCHHHHHHHHCCCCHHHHHHHHH
RRLQRRYVGGPGPLRQQGAASR
HHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TATPATPADGATLWIDLSAVRENFRALARHAAPARLAAVVKADAYGLGAGPVSEALAAE
CCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHH
GCRDFFVAHLSEALELKPVLPEDARLYVLNGLAAGREPACAAAGVLPVLNSLDQAERWSR
HHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LAPDGGAAPPAVLQIDSGMSRLGLPEAEVRRLAGDADLLGRLRIDLLMSHLACADEPDHP
CCCCCCCCCCEEEEECCCHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC
ANAAQAEAFDRLAAALPDWPRSLANSHGALLGPRFRHQLVRSGVFLFGGVRSQVLSPRPV
CCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHCCHHEECCHHHHHCCCCCC
VRLTAPVVQVRDVPAGAGVGYGFAHVTRAPARIATVALGYADGWSWNLAEGWPALFDGQT
EEEECCEEEEECCCCCCCCCCCHHHHHCCCHHHHHEEEECCCCCCCCCCCCCCHHCCCCC
LPVAGRVSMDSITLDVTAFEAAGGRLQPGDEVEFLGAGRDIVDAAEAAGTIPYEILTRMG
CCEECCEEECEEEEEEEEEECCCCCCCCCCCEEEEECCCHHHHHHHHCCCCHHHHHHHHH
RRLQRRYVGGPGPLRQQGAASR
HHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA