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The map label for this gene is rnk [C]

Identifier: 197103524

GI number: 197103524

Start: 51051

End: 51482

Strand: Direct

Name: rnk [C]

Synonym: PHZ_c0058

Alternate gene names: 197103524

Gene position: 51051-51482 (Clockwise)

Preceding gene: 197103522

Following gene: 197103525

Centisome position: 1.28

GC content: 75.46

Gene sequence:

>432_bases
TTGAGCCCGCACAGCTCGCTGCCTTCCAATCCCCGCGTCACGGTCCTGGACGAGGAGTACGCGCCGCTGGCGGATATCGT
CTGCGGCTCGCCCCGGGCGACCCCCGGACTGGCCCTGCTTTGGAACGAGCTGTCCCGCGCCACCCTGGTCCAGGCCGGCC
GCGCGCCGGCGGACGTCGTGCGGCTGGGCTCGGCGGTCGAGTACACGGACCTGACCCGTCGCGAGAGCCGGCGCATCCGC
CTGGTGCTCCCGCGGGAGGCCCGTCCGCCGGCGCTGGAGCCGGTGTCGGGCACGATCGGGGCGGCGCTGCTGGGCCTGCG
GCCCGGCGACGTCTTCCACTGGCGGGCCCCGAGCGGCGAGCTCAGGAGCCTGCAGGTGGATGCGGTCGAACCGCCCCTGG
CGCCGCGGATCTCCCGTCCGCGCCAGAGCTGA

Upstream 100 bases:

>100_bases
GCGGGCTTTCCGCGCGCGGGCGCCTACATAAGGCGAAGGCTGTTCCGAGGGCCGCGTCCGGCGCCCCGGCCGGAGACAGC
CGCCAGAAGAGGAGACCGCC

Downstream 100 bases:

>100_bases
GACGCCGCGGGCGGGGCCGGTGGCCCGGCTCCGCCCGCCTCGTCTTCGGAGACTCCCGTCAGTCCGTTCAGGTCCGCCGG
TAGGCCGCCTCGGCCAGGTC

Product: transcription elongation factor

Products: NA

Alternate protein names: Transcription Elongation Factor

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MSPHSSLPSNPRVTVLDEEYAPLADIVCGSPRATPGLALLWNELSRATLVQAGRAPADVVRLGSAVEYTDLTRRESRRIR
LVLPREARPPALEPVSGTIGAALLGLRPGDVFHWRAPSGELRSLQVDAVEPPLAPRISRPRQS

Sequences:

>Translated_143_residues
MSPHSSLPSNPRVTVLDEEYAPLADIVCGSPRATPGLALLWNELSRATLVQAGRAPADVVRLGSAVEYTDLTRRESRRIR
LVLPREARPPALEPVSGTIGAALLGLRPGDVFHWRAPSGELRSLQVDAVEPPLAPRISRPRQS
>Mature_142_residues
SPHSSLPSNPRVTVLDEEYAPLADIVCGSPRATPGLALLWNELSRATLVQAGRAPADVVRLGSAVEYTDLTRRESRRIRL
VLPREARPPALEPVSGTIGAALLGLRPGDVFHWRAPSGELRSLQVDAVEPPLAPRISRPRQS

Specific function: Rnk And Sspa Can Functionally Replace P.Aeruginosa Alginate Regulatory Gene Algr2. [C]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15482; Mature: 15351

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPHSSLPSNPRVTVLDEEYAPLADIVCGSPRATPGLALLWNELSRATLVQAGRAPADVV
CCCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHH
RLGSAVEYTDLTRRESRRIRLVLPREARPPALEPVSGTIGAALLGLRPGDVFHWRAPSGE
HHCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCC
LRSLQVDAVEPPLAPRISRPRQS
CEEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SPHSSLPSNPRVTVLDEEYAPLADIVCGSPRATPGLALLWNELSRATLVQAGRAPADVV
CCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHH
RLGSAVEYTDLTRRESRRIRLVLPREARPPALEPVSGTIGAALLGLRPGDVFHWRAPSGE
HHCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCC
LRSLQVDAVEPPLAPRISRPRQS
CEEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA