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The map label for this gene is rnk [C]

Identifier: 197103525

GI number: 197103525

Start: 53242

End: 53637

Strand: Direct

Name: rnk [C]

Synonym: PHZ_c0059

Alternate gene names: 197103525

Gene position: 53242-53637 (Clockwise)

Preceding gene: 197103524

Following gene: 197103528

Centisome position: 1.33

GC content: 73.23

Gene sequence:

>396_bases
GTGACCGACGCCGCCGACGCGCCCCCTCCGCCCGCCGTCTACGCCACGCCCGCCGACCTGAAGCGGCTCCGCGCGATCTC
GCTCTCGCGCCAGGCGCCCGGCCTGGGCCAGGAGCTGCTGCGCCGCGAGGTGGAGCGGATGGCGATCCGGGCGTACGACG
ACCTGCGGTTCGTGCGCCTGAACTCAACCGTCACCTACAAGGACCTGCGCACCCGGCGCCGCCGGATCGTGCAGGTCGTC
CAGCCCGAGCACGCCCACCAGGACGAGAACCGCGTCTCCATCCTGTCGCCGATCGGGGCGGCGCTGATCGGCCTGCCCGA
AGGCTCGGTGTTCCGCTGGGCCGAGCGGATCGATGGGGCGACCCGAGCCGTGAAGGTGCTGGCGGTGGAGTCCTGA

Upstream 100 bases:

>100_bases
ACGCCGAAGCCGACGCCCTGGTGCGCCCACGGCGCTGGCGCCGCCGCCCCGCTGGGCCCCCGACCTTTCGCCCATCCTTC
GATCCAGGGAGACCTCCGCC

Downstream 100 bases:

>100_bases
CGGCTCAGCCGAGCGTCAGCCACAGGCCCGCGGCGACGGCGAGCGCGGCCGCGCCGAGCAGCGCCGGGAGCAGGCTGCGG
GAGCGCCGGCGCAGCCGCGA

Product: transcription elongation factor GreA/GreB family

Products: NA

Alternate protein names: Transcription Elongation Factor

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MTDAADAPPPPAVYATPADLKRLRAISLSRQAPGLGQELLRREVERMAIRAYDDLRFVRLNSTVTYKDLRTRRRRIVQVV
QPEHAHQDENRVSILSPIGAALIGLPEGSVFRWAERIDGATRAVKVLAVES

Sequences:

>Translated_131_residues
MTDAADAPPPPAVYATPADLKRLRAISLSRQAPGLGQELLRREVERMAIRAYDDLRFVRLNSTVTYKDLRTRRRRIVQVV
QPEHAHQDENRVSILSPIGAALIGLPEGSVFRWAERIDGATRAVKVLAVES
>Mature_130_residues
TDAADAPPPPAVYATPADLKRLRAISLSRQAPGLGQELLRREVERMAIRAYDDLRFVRLNSTVTYKDLRTRRRRIVQVVQ
PEHAHQDENRVSILSPIGAALIGLPEGSVFRWAERIDGATRAVKVLAVES

Specific function: Rnk And Sspa Can Functionally Replace P.Aeruginosa Alginate Regulatory Gene Algr2. [C]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14637; Mature: 14506

Theoretical pI: Translated: 10.70; Mature: 10.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDAADAPPPPAVYATPADLKRLRAISLSRQAPGLGQELLRREVERMAIRAYDDLRFVRL
CCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEE
NSTVTYKDLRTRRRRIVQVVQPEHAHQDENRVSILSPIGAALIGLPEGSVFRWAERIDGA
CCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHEECCCCHHHHHHHHCCCH
TRAVKVLAVES
HHEEEEEEECC
>Mature Secondary Structure 
TDAADAPPPPAVYATPADLKRLRAISLSRQAPGLGQELLRREVERMAIRAYDDLRFVRL
CCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEE
NSTVTYKDLRTRRRRIVQVVQPEHAHQDENRVSILSPIGAALIGLPEGSVFRWAERIDGA
CCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHEECCCCHHHHHHHHCCCH
TRAVKVLAVES
HHEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA