BacMap

Definition	Phenylobacterium zucineum HLK1, complete genome.
Accession	NC_011144
Length	3,996,255

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The map label for this gene is yqjQ [H]

Identifier: 197103517

GI number: 197103517

Start: 42413

End: 43213

Strand: Direct

Name: yqjQ [H]

Synonym: PHZ_c0051

Alternate gene names: 197103517

Gene position: 42413-43213 (Clockwise)

Preceding gene: 197103513

Following gene: 197103519

Centisome position: 1.06

GC content: 72.78

Gene sequence:

>801_bases
ATGGATCGCAGGCTTGCGCTGGTCACCGGGGCGTCGGCGGGCATCGGGGCGGCGTTCGCCCGCATCCTGGCCGGCCATGG
CTACGACGTGGCGCTCACCGCCCGCAGGACCGATCGGCTGGAGGCGCTCGCCGACGAAATCCGTCTCCGCTACGGCGTCG
AGACCCTCACCGTCGCCGCCGACCTGGCGCAGCCCGAGGGGCCCGGCCAGATCCTCGATCACCTGACCGCCCACGGCCGC
ACCGTGGACGCCCTGGTGAACAACGCCGGCTACGGCCTGCCGGGAACCTTCGCCGAGACCCGCTGGGCCGACCAGGCCGC
CTTCCTGCAGGTGATGGTGACCGCCCCGTGCGAGCTGGCCCACCGCGTCCTGCCCGGCATGGTCCAGCGCCGGTTCGGCC
GGATCGTCAACGTGGCCTCGCTGGCGGGGCTGGTCCCGGCGGCGGCGGGCCACACGCTGTACGCGGCCTCGAAGAGCCTG
CTGATCAAGTTCTCCCAGAGCCTGTCGCTGGAGACGGCCGGCGAGGGCGTCCACGTCACGGCCCTGTGCCCGGGCTTCAC
CTATTCCGAGTTCCACGACGTCAACGGCACCCGCGGCCTGGTCAGCGCCTCGACGCCCTCGTGGATGTGGCTGGGCGCCG
ACGAGGTGGCGGCCGCGGGCTATGAAGCGGTGGAGGCCGGCCGCACGATCTGCGTGCCCGGGGCGCCGAACAAGGCCATC
GCCGCCGTCGCCAAGCTGCTGCCCGACGAGTGGGGTCTGGCGCTGATGGCCAGCCAGGGACAGCGCTTCCGCAAGCTCTG
A

Upstream 100 bases:

>100_bases
GCCGATACACCCAATCCCAGGCGGGTTCAATGCGCGGCTTGCGCGCCGCCGCCTTGGCCCTAGTTTCGTGGCTCGGGGCA
TTTCGAGGGGCGTCGGACAC

Downstream 100 bases:

>100_bases
CCGGCGTTCAGTGCCCGTAGGGGTTCGCCGCCTCGGGGCGGATGAACCCGGCGGTGGACTCGGCCAGCCCCGCGAAGATG
AACTGGATGGCCAGGGCGCA

Product: oxidoreductase, short-chain dehydrogenase/reductase family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MDRRLALVTGASAGIGAAFARILAGHGYDVALTARRTDRLEALADEIRLRYGVETLTVAADLAQPEGPGQILDHLTAHGR
TVDALVNNAGYGLPGTFAETRWADQAAFLQVMVTAPCELAHRVLPGMVQRRFGRIVNVASLAGLVPAAAGHTLYAASKSL
LIKFSQSLSLETAGEGVHVTALCPGFTYSEFHDVNGTRGLVSASTPSWMWLGADEVAAAGYEAVEAGRTICVPGAPNKAI
AAVAKLLPDEWGLALMASQGQRFRKL

Sequences:

>Translated_266_residues
MDRRLALVTGASAGIGAAFARILAGHGYDVALTARRTDRLEALADEIRLRYGVETLTVAADLAQPEGPGQILDHLTAHGR
TVDALVNNAGYGLPGTFAETRWADQAAFLQVMVTAPCELAHRVLPGMVQRRFGRIVNVASLAGLVPAAAGHTLYAASKSL
LIKFSQSLSLETAGEGVHVTALCPGFTYSEFHDVNGTRGLVSASTPSWMWLGADEVAAAGYEAVEAGRTICVPGAPNKAI
AAVAKLLPDEWGLALMASQGQRFRKL
>Mature_266_residues
MDRRLALVTGASAGIGAAFARILAGHGYDVALTARRTDRLEALADEIRLRYGVETLTVAADLAQPEGPGQILDHLTAHGR
TVDALVNNAGYGLPGTFAETRWADQAAFLQVMVTAPCELAHRVLPGMVQRRFGRIVNVASLAGLVPAAAGHTLYAASKSL
LIKFSQSLSLETAGEGVHVTALCPGFTYSEFHDVNGTRGLVSASTPSWMWLGADEVAAAGYEAVEAGRTICVPGAPNKAI
AAVAKLLPDEWGLALMASQGQRFRKL

Specific function: Unknown

COG id: COG0300

COG function: function code R; Short-chain dehydrogenases of various substrate specificities

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7705855, Length=185, Percent_Identity=35.6756756756757, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI226371731, Length=187, Percent_Identity=34.2245989304813, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI40254992, Length=194, Percent_Identity=32.4742268041237, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI4557649, Length=182, Percent_Identity=30.7692307692308, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI109715829, Length=230, Percent_Identity=30, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=30.2083333333333, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI5031737, Length=192, Percent_Identity=30.2083333333333, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI20149619, Length=281, Percent_Identity=27.0462633451957, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI7657478, Length=196, Percent_Identity=34.6938775510204, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI31542939, Length=188, Percent_Identity=32.4468085106383, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI32483357, Length=197, Percent_Identity=30.4568527918782, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI87082100, Length=186, Percent_Identity=33.3333333333333, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1787335, Length=221, Percent_Identity=31.6742081447964, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787820, Length=194, Percent_Identity=35.0515463917526, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI2367175, Length=224, Percent_Identity=31.6964285714286, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1786701, Length=207, Percent_Identity=29.951690821256, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI87082160, Length=183, Percent_Identity=27.8688524590164, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790717, Length=188, Percent_Identity=27.6595744680851, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=196, Percent_Identity=33.1632653061224, Blast_Score=97, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI71994604, Length=195, Percent_Identity=34.8717948717949, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17562904, Length=215, Percent_Identity=29.7674418604651, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17562908, Length=202, Percent_Identity=33.6633663366337, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17538486, Length=204, Percent_Identity=28.4313725490196, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=218, Percent_Identity=28.8990825688073, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=202, Percent_Identity=31.6831683168317, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI72000259, Length=203, Percent_Identity=33.0049261083744, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI193204405, Length=203, Percent_Identity=32.512315270936, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17560150, Length=259, Percent_Identity=29.3436293436293, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17531453, Length=191, Percent_Identity=33.5078534031414, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=208, Percent_Identity=30.2884615384615, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17508895, Length=251, Percent_Identity=26.6932270916335, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=201, Percent_Identity=29.8507462686567, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=250, Percent_Identity=27.6, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17559104, Length=196, Percent_Identity=28.0612244897959, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=199, Percent_Identity=28.1407035175879, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=26.3157894736842, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17562990, Length=218, Percent_Identity=29.8165137614679, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI212646214, Length=186, Percent_Identity=29.5698924731183, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17565030, Length=268, Percent_Identity=27.6119402985075, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=251, Percent_Identity=25.4980079681275, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI25152911, Length=198, Percent_Identity=30.8080808080808, Blast_Score=68, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=226, Percent_Identity=31.4159292035398, Blast_Score=79, Evalue=7e-16,
Organism=Saccharomyces cerevisiae, GI6319635, Length=184, Percent_Identity=30.4347826086957, Blast_Score=72, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6322861, Length=190, Percent_Identity=28.4210526315789, Blast_Score=71, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24640442, Length=197, Percent_Identity=34.010152284264, Blast_Score=101, Evalue=5e-22,
Organism=Drosophila melanogaster, GI28574402, Length=190, Percent_Identity=36.8421052631579, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24584744, Length=190, Percent_Identity=36.8421052631579, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI23397609, Length=192, Percent_Identity=34.375, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24584748, Length=189, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI161076933, Length=189, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI21357041, Length=190, Percent_Identity=33.1578947368421, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI28571526, Length=194, Percent_Identity=34.020618556701, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24644339, Length=247, Percent_Identity=29.5546558704453, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24584752, Length=192, Percent_Identity=31.7708333333333, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21358495, Length=194, Percent_Identity=28.8659793814433, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI28571387, Length=206, Percent_Identity=31.0679611650485, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24641232, Length=197, Percent_Identity=27.9187817258883, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24580925, Length=191, Percent_Identity=29.8429319371728, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24643142, Length=188, Percent_Identity=29.2553191489362, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27974; Mature: 27974

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRRLALVTGASAGIGAAFARILAGHGYDVALTARRTDRLEALADEIRLRYGVETLTVAA
CCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCHHHHEEEH
DLAQPEGPGQILDHLTAHGRTVDALVNNAGYGLPGTFAETRWADQAAFLQVMVTAPCELA
HHCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
HRVLPGMVQRRFGRIVNVASLAGLVPAAAGHTLYAASKSLLIKFSQSLSLETAGEGVHVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEHHCCCCEEECCCCEEEE
ALCPGFTYSEFHDVNGTRGLVSASTPSWMWLGADEVAAAGYEAVEAGRTICVPGAPNKAI
EECCCCCHHHHHCCCCCCCEEECCCCCEEEECCHHHHHCCHHHHHCCCEEEECCCCCHHH
AAVAKLLPDEWGLALMASQGQRFRKL
HHHHHHCCCCCCEEEEHHCCHHHHCC
>Mature Secondary Structure
MDRRLALVTGASAGIGAAFARILAGHGYDVALTARRTDRLEALADEIRLRYGVETLTVAA
CCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCHHHHEEEH
DLAQPEGPGQILDHLTAHGRTVDALVNNAGYGLPGTFAETRWADQAAFLQVMVTAPCELA
HHCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
HRVLPGMVQRRFGRIVNVASLAGLVPAAAGHTLYAASKSLLIKFSQSLSLETAGEGVHVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEHHCCCCEEECCCCEEEE
ALCPGFTYSEFHDVNGTRGLVSASTPSWMWLGADEVAAAGYEAVEAGRTICVPGAPNKAI
EECCCCCHHHHHCCCCCCCEEECCCCCEEEECCHHHHHCCHHHHHCCCEEEECCCCCHHH
AAVAKLLPDEWGLALMASQGQRFRKL
HHHHHHCCCCCCEEEEHHCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]