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The map label for this gene is ybfL [H]

Identifier: 195977648

GI number: 195977648

Start: 525216

End: 526346

Strand: Direct

Name: ybfL [H]

Synonym: Sez_0507

Alternate gene names: 195977648

Gene position: 525216-526346 (Clockwise)

Preceding gene: 195977647

Following gene: 195977649

Centisome position: 25.95

GC content: 39.7

Gene sequence:

>1131_bases
GTGGAGGGTTTTATGATGGACAACATTATCAACTTTTTAATTACCGTAAAAGATGACCGAGAACCTTGGAAAATAAAACA
TGTGTTATCAGATATCGTCCTTCTTATTTTCTTTGCGCGCTTATCTGGAGCGGAATACTGGGATGAAATAGAGGCATTTG
GTCAGGCTTATGAAGCTACTCTAAAAACGGTTCTTCAGTTGGAAAATGGGATTCCCTCCCATGATACCCTTCAGAGAGTT
TTTGCGACTTTGGATCCCCAAGTATTGGTAGAAGTCACCCAAATGTGGTCAGACATTCTAGAAGAATCAGACTTATCCTC
TAGGAATCTTTTTAGCTTTTCGAAACGGCTAGTCGCTATTGATGGGAAAACGATTCGTGGCAATGGCAGCGCTAAGCAGA
AAGCCTTACATATTGTGACCGCTTATGCGACGGATTTAGGGATTTCCTATGGTCAAGTAGCGACTAATGAGAAGAGTAAT
GAAATCACTGCGATTCCAGAGTTATTGGATATGATTTCAGTCAAAGGTTGTATGGTGAGCATTGATGCGATGGGAACTCA
AAAGGCCATTGCGGATAAGATTATCAAGAAGAAAGCTGATTATTGCTTAGCTGTTAAAGAGAATCAGAAGACTCTGTTAG
AGGATATTGTGCCATTTTTTGAGATGAGTCAAGAGGCGGATGATCATTATCACACCGTTGAAAAAGCGCATGGTCAAATA
GAGACGAGAGCATATGAAGTGATTCATGATGTCAGTTGGCTGAGAAAGACCCATCCTGAATTTGGTCATATTCAAAGTAT
TGGACGAGCTCGTATTCATCTTGATAAGAATGGTCAAGAAAGCGAAGAGTCCCGCTACTTTATTTTAAGTTGTCAGGTTA
GCGCTAAAGAGTTGTGTGACTATGTGAGAGGTCATTGGCAGATAGAGAGCATGCATTGGCTACTGGATGTTGTTTTTCGT
GAAGATGCCAATAAAACGTTGAATAAGCAACTCGCATTTAATTTAAATGTCATGGATAAATTCTGTCTAGCGGTCTTAAA
ACAGTTAGATTTTGGAAAGAAGATGAGTATGCGTCGTAAGAAATATGCCCTAAGTCTGTCCTTTGACAAGTATTTGAAAC
AATTACTTTAG

Upstream 100 bases:

>100_bases
CGTTTGTTGAGGTGTCAGAGGCACGACAAACGCATGAAGAAAATTTAGTTTTCAGAAAACAATTTCATACCAAAACATCA
AATCCTTCGCTATACTAATA

Downstream 100 bases:

>100_bases
GGCAAAAAAATTCCTACAGTTGAAAAATAGAATAGAAGGTTTCATGCGTTTGTTGTGGTGTCAGAGGGCTCCTTCTTGCC
TTTAGCTAGGCTTTTTCTTA

Product: transposase IS1548-like

Products: NA

Alternate protein names: H repeat-associated protein in rhsC-phrB intergenic region; ORF-H2 [H]

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MEGFMMDNIINFLITVKDDREPWKIKHVLSDIVLLIFFARLSGAEYWDEIEAFGQAYEATLKTVLQLENGIPSHDTLQRV
FATLDPQVLVEVTQMWSDILEESDLSSRNLFSFSKRLVAIDGKTIRGNGSAKQKALHIVTAYATDLGISYGQVATNEKSN
EITAIPELLDMISVKGCMVSIDAMGTQKAIADKIIKKKADYCLAVKENQKTLLEDIVPFFEMSQEADDHYHTVEKAHGQI
ETRAYEVIHDVSWLRKTHPEFGHIQSIGRARIHLDKNGQESEESRYFILSCQVSAKELCDYVRGHWQIESMHWLLDVVFR
EDANKTLNKQLAFNLNVMDKFCLAVLKQLDFGKKMSMRRKKYALSLSFDKYLKQLL

Sequences:

>Translated_376_residues
MEGFMMDNIINFLITVKDDREPWKIKHVLSDIVLLIFFARLSGAEYWDEIEAFGQAYEATLKTVLQLENGIPSHDTLQRV
FATLDPQVLVEVTQMWSDILEESDLSSRNLFSFSKRLVAIDGKTIRGNGSAKQKALHIVTAYATDLGISYGQVATNEKSN
EITAIPELLDMISVKGCMVSIDAMGTQKAIADKIIKKKADYCLAVKENQKTLLEDIVPFFEMSQEADDHYHTVEKAHGQI
ETRAYEVIHDVSWLRKTHPEFGHIQSIGRARIHLDKNGQESEESRYFILSCQVSAKELCDYVRGHWQIESMHWLLDVVFR
EDANKTLNKQLAFNLNVMDKFCLAVLKQLDFGKKMSMRRKKYALSLSFDKYLKQLL
>Mature_376_residues
MEGFMMDNIINFLITVKDDREPWKIKHVLSDIVLLIFFARLSGAEYWDEIEAFGQAYEATLKTVLQLENGIPSHDTLQRV
FATLDPQVLVEVTQMWSDILEESDLSSRNLFSFSKRLVAIDGKTIRGNGSAKQKALHIVTAYATDLGISYGQVATNEKSN
EITAIPELLDMISVKGCMVSIDAMGTQKAIADKIIKKKADYCLAVKENQKTLLEDIVPFFEMSQEADDHYHTVEKAHGQI
ETRAYEVIHDVSWLRKTHPEFGHIQSIGRARIHLDKNGQESEESRYFILSCQVSAKELCDYVRGHWQIESMHWLLDVVFR
EDANKTLNKQLAFNLNVMDKFCLAVLKQLDFGKKMSMRRKKYALSLSFDKYLKQLL

Specific function: Unknown

COG id: COG5433

COG function: function code L; Transposase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family [H]

Homologues:

Organism=Escherichia coli, GI1787733, Length=363, Percent_Identity=36.3636363636364, Blast_Score=208, Evalue=6e-55,
Organism=Escherichia coli, GI1789896, Length=353, Percent_Identity=36.8271954674221, Blast_Score=203, Evalue=1e-53,
Organism=Escherichia coli, GI1786924, Length=237, Percent_Identity=42.1940928270042, Blast_Score=175, Evalue=5e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002559 [H]

Pfam domain/function: PF01609 Transposase_11 [H]

EC number: NA

Molecular weight: Translated: 43081; Mature: 43081

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGFMMDNIINFLITVKDDREPWKIKHVLSDIVLLIFFARLSGAEYWDEIEAFGQAYEAT
CCCHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LKTVLQLENGIPSHDTLQRVFATLDPQVLVEVTQMWSDILEESDLSSRNLFSFSKRLVAI
HHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCEEEE
DGKTIRGNGSAKQKALHIVTAYATDLGISYGQVATNEKSNEITAIPELLDMISVKGCMVS
CCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE
IDAMGTQKAIADKIIKKKADYCLAVKENQKTLLEDIVPFFEMSQEADDHYHTVEKAHGQI
EECCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHH
ETRAYEVIHDVSWLRKTHPEFGHIQSIGRARIHLDKNGQESEESRYFILSCQVSAKELCD
HHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCCCCEEEEEECCCHHHHHH
YVRGHWQIESMHWLLDVVFREDANKTLNKQLAFNLNVMDKFCLAVLKQLDFGKKMSMRRK
HHHCCEEEHHHHHHHHHHHHHCCHHHHHHHHEEECCHHHHHHHHHHHHCCCCHHHHHHHH
KYALSLSFDKYLKQLL
HHHEEECHHHHHHHHC
>Mature Secondary Structure
MEGFMMDNIINFLITVKDDREPWKIKHVLSDIVLLIFFARLSGAEYWDEIEAFGQAYEAT
CCCHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LKTVLQLENGIPSHDTLQRVFATLDPQVLVEVTQMWSDILEESDLSSRNLFSFSKRLVAI
HHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCEEEE
DGKTIRGNGSAKQKALHIVTAYATDLGISYGQVATNEKSNEITAIPELLDMISVKGCMVS
CCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE
IDAMGTQKAIADKIIKKKADYCLAVKENQKTLLEDIVPFFEMSQEADDHYHTVEKAHGQI
EECCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHH
ETRAYEVIHDVSWLRKTHPEFGHIQSIGRARIHLDKNGQESEESRYFILSCQVSAKELCD
HHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCCCCEEEEEECCCHHHHHH
YVRGHWQIESMHWLLDVVFREDANKTLNKQLAFNLNVMDKFCLAVLKQLDFGKKMSMRRK
HHHCCEEEHHHHHHHHHHHHHCCHHHHHHHHEEECCHHHHHHHHHHHHCCCCHHHHHHHH
KYALSLSFDKYLKQLL
HHHEEECHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8387990; 8905232; 9278503 [H]