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The map label for this gene is rbsC [H]

Identifier: 195977613

GI number: 195977613

Start: 492948

End: 493889

Strand: Direct

Name: rbsC [H]

Synonym: Sez_0472

Alternate gene names: 195977613

Gene position: 492948-493889 (Clockwise)

Preceding gene: 195977612

Following gene: 195977614

Centisome position: 24.35

GC content: 43.42

Gene sequence:

>942_bases
GTGAAGCAGGCTATGAAATACATGTCAGAGTTAACAACTCTGATAGCGCTGGTGGGCTTGATGATCGTGATAACCATTAT
CAATCCAAGCTTTTTAACCACTAACAATTTATTGAATTTATTACTACAGGTAACAGCTAATGGGTTTATTGCCTTTGGCA
TGACCTTTGTGATTCTAACAGGTGGGATAGACCTGTCTGTCGGATCAAGTTTGGCTTTATCAAGTGCACTTGCAGCAGGC
TTGATTGGTGGTGGCCTTCCTGTTCCTGTCGCAATTGTGCTAGCCATCTGCTTGGGTGGGCTCTTTGGCATGCTAAATGG
CTTACTGATTGCTTATGGGAAATTAGCACCCTTTATTGTCACCTTGGCCACCATGACGATTTTTCGTGGAGCTACCTTGG
TTTATACCAATGGAAATCCAGTGACAAAGGGACTTAGTGATAGCTTTCTTTTCCAATTTTTGGGGCAGGGCTATATTGTT
GGGATTCCCTTTCCTGTGATTCTCATGTTTCTTGTTTTTGTGATATTGGCTATCTTGCTACATAAAACAGCCTTTGGTAA
AGCTGTCTACGCACTGGGAGGAAATGAAAAAGCAGCGTATATCTCAGGCATTAAGCTGAATAAGGTCAAAATCATTATTT
ATACCATTTCAGGCATGATGGCATCGCTCTCTGGATTGATTATCACATCACGCCTTAGCTCAGCCCAGCCAACAGCGGGT
GCTAGCTATGAAATGGACGCTATTGCTGCGGTTGTCTTGGGAGGGACCTCTCTTTCAGGAGGTAAGGGCCGTATTTGGGG
GACCTTGATTGGTGCTCTGATCATTGGTGTGCTAAACAATGGCTTGAATATTATTGGTGTGTCTGCATTCTGGCAGCAGG
TTGTCAAGGGGATCGTTATTCTGATTGCTGTCTTGCTTGATCGTTTTAAAGTAGCAAAATAA

Upstream 100 bases:

>100_bases
CGGATCGTAGTTATGCATGAAGGGAGAATCACTGGAGAACTCAGTCGAGGAGAAGCCACTCAAGAAAAGGTAATGCAGCT
AGCAACAGGAGGTAAGTAAG

Downstream 100 bases:

>100_bases
AAGGAGGCTAACAAATGACATTTGGTAAAAAACTAGGCTTTTTAGCCCTTATTCTCTCAATGGTGCTTGTACTTGGTGCT
TGTGGCAAGACTGGTCTAGG

Product: ribose transport system permease protein RbsC

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MKQAMKYMSELTTLIALVGLMIVITIINPSFLTTNNLLNLLLQVTANGFIAFGMTFVILTGGIDLSVGSSLALSSALAAG
LIGGGLPVPVAIVLAICLGGLFGMLNGLLIAYGKLAPFIVTLATMTIFRGATLVYTNGNPVTKGLSDSFLFQFLGQGYIV
GIPFPVILMFLVFVILAILLHKTAFGKAVYALGGNEKAAYISGIKLNKVKIIIYTISGMMASLSGLIITSRLSSAQPTAG
ASYEMDAIAAVVLGGTSLSGGKGRIWGTLIGALIIGVLNNGLNIIGVSAFWQQVVKGIVILIAVLLDRFKVAK

Sequences:

>Translated_313_residues
MKQAMKYMSELTTLIALVGLMIVITIINPSFLTTNNLLNLLLQVTANGFIAFGMTFVILTGGIDLSVGSSLALSSALAAG
LIGGGLPVPVAIVLAICLGGLFGMLNGLLIAYGKLAPFIVTLATMTIFRGATLVYTNGNPVTKGLSDSFLFQFLGQGYIV
GIPFPVILMFLVFVILAILLHKTAFGKAVYALGGNEKAAYISGIKLNKVKIIIYTISGMMASLSGLIITSRLSSAQPTAG
ASYEMDAIAAVVLGGTSLSGGKGRIWGTLIGALIIGVLNNGLNIIGVSAFWQQVVKGIVILIAVLLDRFKVAK
>Mature_313_residues
MKQAMKYMSELTTLIALVGLMIVITIINPSFLTTNNLLNLLLQVTANGFIAFGMTFVILTGGIDLSVGSSLALSSALAAG
LIGGGLPVPVAIVLAICLGGLFGMLNGLLIAYGKLAPFIVTLATMTIFRGATLVYTNGNPVTKGLSDSFLFQFLGQGYIV
GIPFPVILMFLVFVILAILLHKTAFGKAVYALGGNEKAAYISGIKLNKVKIIIYTISGMMASLSGLIITSRLSSAQPTAG
ASYEMDAIAAVVLGGTSLSGGKGRIWGTLIGALIIGVLNNGLNIIGVSAFWQQVVKGIVILIAVLLDRFKVAK

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=305, Percent_Identity=53.1147540983606, Blast_Score=293, Evalue=1e-80,
Organism=Escherichia coli, GI1790524, Length=279, Percent_Identity=44.8028673835125, Blast_Score=198, Evalue=3e-52,
Organism=Escherichia coli, GI1788896, Length=302, Percent_Identity=37.7483443708609, Blast_Score=191, Evalue=7e-50,
Organism=Escherichia coli, GI145693152, Length=305, Percent_Identity=37.0491803278689, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI87082395, Length=286, Percent_Identity=39.5104895104895, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1788471, Length=331, Percent_Identity=34.7432024169184, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1787794, Length=304, Percent_Identity=32.5657894736842, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1789992, Length=126, Percent_Identity=47.6190476190476, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI145693214, Length=246, Percent_Identity=36.1788617886179, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787793, Length=264, Percent_Identity=34.469696969697, Blast_Score=115, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 32547; Mature: 32547

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQAMKYMSELTTLIALVGLMIVITIINPSFLTTNNLLNLLLQVTANGFIAFGMTFVILT
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
GGIDLSVGSSLALSSALAAGLIGGGLPVPVAIVLAICLGGLFGMLNGLLIAYGKLAPFIV
CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLATMTIFRGATLVYTNGNPVTKGLSDSFLFQFLGQGYIVGIPFPVILMFLVFVILAILL
HHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHH
HKTAFGKAVYALGGNEKAAYISGIKLNKVKIIIYTISGMMASLSGLIITSRLSSAQPTAG
HHHHHCCEEEEECCCCCEEEEECEEECEEEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCC
ASYEMDAIAAVVLGGTSLSGGKGRIWGTLIGALIIGVLNNGLNIIGVSAFWQQVVKGIVI
CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHH
LIAVLLDRFKVAK
HHHHHHHHHHCCC
>Mature Secondary Structure
MKQAMKYMSELTTLIALVGLMIVITIINPSFLTTNNLLNLLLQVTANGFIAFGMTFVILT
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
GGIDLSVGSSLALSSALAAGLIGGGLPVPVAIVLAICLGGLFGMLNGLLIAYGKLAPFIV
CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLATMTIFRGATLVYTNGNPVTKGLSDSFLFQFLGQGYIVGIPFPVILMFLVFVILAILL
HHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHH
HKTAFGKAVYALGGNEKAAYISGIKLNKVKIIIYTISGMMASLSGLIITSRLSSAQPTAG
HHHHHCCEEEEECCCCCEEEEECEEECEEEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCC
ASYEMDAIAAVVLGGTSLSGGKGRIWGTLIGALIIGVLNNGLNIIGVSAFWQQVVKGIVI
CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHH
LIAVLLDRFKVAK
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]