Click here to switch to the map view.

The map label for this gene is yidA [H]

Identifier: 195977605

GI number: 195977605

Start: 486156

End: 486980

Strand: Direct

Name: yidA [H]

Synonym: Sez_0464

Alternate gene names: 195977605

Gene position: 486156-486980 (Clockwise)

Preceding gene: 195977604

Following gene: 195977607

Centisome position: 24.02

GC content: 45.09

Gene sequence:

>825_bases
ATGATTCAGCTTATAGCAATTGATTTAGACGGTACCCTGCTGGATAGCAAAAAGCACATTCCAAAAGAGAATATCAAGGC
TATCCAAGCAGCTGCACGAGAGGGGATAAAGGTTGTTCTGTGCACAGGCCGCCCCCAGTCTGGGACAAGGCCGTATTTTG
AGCAATTAGGCTTGAGTGATGATGAGGAATACCTTATTTTAAACAATGGCTGCAGCACCTATAGGAGCCCAAGCTGGGAG
CTGCTGCATTATCAAAGCCTGACCTTTTCAGCTATTAAGCACCTTTACCAGCTGTCACAGCCTTTTTCAGATATTTATCT
CACCCTGACTGGAGAGCGTGATTATCTTGTGATAGATAGCAAGGTTCCAGATATGGTTCAGGCTGATGGTGATTTGGTTT
TTACAAAGGTAAAGGCTACTAACCTATCTCAGTTATCCAACAGCAGTCAAATCATATTTCAAGCTATGTACATGGGAGAA
AAGGCTGCCCTAGATACTTTTGAGGCTCTTGTTAGAGAAAAACTCAGCGCAAGCTTTAGTGTGGTCCGCAGTCAAGAAAC
CATCCTAGAGGTAATGCCGGAGTGTGTGACCAAGGCCTCTGCCCTGAAAAAATTAACCGCTGATCTGAAGCTGCGCCCAG
ACCAAGTGATGGCAATTGGAGATGCAGCAAATGATCTTGAAATGTTAGCCTATGCTGGCTTAGGTGTCGCTATGGGAAAC
GCTGATGAGGCAATTAAAAAGGTCGCTGACAAGGTAAGCCTCTCCAATGATCAAGCAGGCGTGGCCCATGCCATTAATCA
ATTTGCATTGAAAAAGGGCTCTTAA

Upstream 100 bases:

>100_bases
GAATGCTACTTGCTGGTTGTTTTATTGACAGTCATGCGTATGATTGGCAACAAAAGACAATGGCACCTACCTAAGATAAA
ATGGAAAGAGGACTGATACG

Downstream 100 bases:

>100_bases
GCACAGTCAAACCAGCCCGTCAGAAAAGGCCTCCAAAAGCTAGAGATGATAAGCTCAGTTTTAGAGGTGTTGACCAGAGC
TGAGCTGTCTTGGAACACCA

Product: HAD superfamily hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MIQLIAIDLDGTLLDSKKHIPKENIKAIQAAAREGIKVVLCTGRPQSGTRPYFEQLGLSDDEEYLILNNGCSTYRSPSWE
LLHYQSLTFSAIKHLYQLSQPFSDIYLTLTGERDYLVIDSKVPDMVQADGDLVFTKVKATNLSQLSNSSQIIFQAMYMGE
KAALDTFEALVREKLSASFSVVRSQETILEVMPECVTKASALKKLTADLKLRPDQVMAIGDAANDLEMLAYAGLGVAMGN
ADEAIKKVADKVSLSNDQAGVAHAINQFALKKGS

Sequences:

>Translated_274_residues
MIQLIAIDLDGTLLDSKKHIPKENIKAIQAAAREGIKVVLCTGRPQSGTRPYFEQLGLSDDEEYLILNNGCSTYRSPSWE
LLHYQSLTFSAIKHLYQLSQPFSDIYLTLTGERDYLVIDSKVPDMVQADGDLVFTKVKATNLSQLSNSSQIIFQAMYMGE
KAALDTFEALVREKLSASFSVVRSQETILEVMPECVTKASALKKLTADLKLRPDQVMAIGDAANDLEMLAYAGLGVAMGN
ADEAIKKVADKVSLSNDQAGVAHAINQFALKKGS
>Mature_274_residues
MIQLIAIDLDGTLLDSKKHIPKENIKAIQAAAREGIKVVLCTGRPQSGTRPYFEQLGLSDDEEYLILNNGCSTYRSPSWE
LLHYQSLTFSAIKHLYQLSQPFSDIYLTLTGERDYLVIDSKVPDMVQADGDLVFTKVKATNLSQLSNSSQIIFQAMYMGE
KAALDTFEALVREKLSASFSVVRSQETILEVMPECVTKASALKKLTADLKLRPDQVMAIGDAANDLEMLAYAGLGVAMGN
ADEAIKKVADKVSLSNDQAGVAHAINQFALKKGS

Specific function: Catalyzes the dephosphorylation of the artificial chromogenic substrate p-nitrophenyl phosphate (pNPP) and of the natural substrates erythrose 4-phosphate and mannose 1-phosphate [H]

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family [H]

Homologues:

Organism=Escherichia coli, GI2367265, Length=278, Percent_Identity=33.4532374100719, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI87081741, Length=242, Percent_Identity=27.6859504132231, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48994981, Length=278, Percent_Identity=26.6187050359712, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006379
- InterPro:   IPR000150 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 29998; Mature: 29998

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: PS01229 COF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQLIAIDLDGTLLDSKKHIPKENIKAIQAAAREGIKVVLCTGRPQSGTRPYFEQLGLSD
CEEEEEEECCCEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHCCCCC
DEEYLILNNGCSTYRSPSWELLHYQSLTFSAIKHLYQLSQPFSDIYLTLTGERDYLVIDS
CCCEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEECC
KVPDMVQADGDLVFTKVKATNLSQLSNSSQIIFQAMYMGEKAALDTFEALVREKLSASFS
CCCHHHHCCCCEEEEEEECCCHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
VVRSQETILEVMPECVTKASALKKLTADLKLRPDQVMAIGDAANDLEMLAYAGLGVAMGN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCEEEECCCCCHHHHHHHHCCCEEECC
ADEAIKKVADKVSLSNDQAGVAHAINQFALKKGS
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIQLIAIDLDGTLLDSKKHIPKENIKAIQAAAREGIKVVLCTGRPQSGTRPYFEQLGLSD
CEEEEEEECCCEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHCCCCC
DEEYLILNNGCSTYRSPSWELLHYQSLTFSAIKHLYQLSQPFSDIYLTLTGERDYLVIDS
CCCEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEECC
KVPDMVQADGDLVFTKVKATNLSQLSNSSQIIFQAMYMGEKAALDTFEALVREKLSASFS
CCCHHHHCCCCEEEEEEECCCHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
VVRSQETILEVMPECVTKASALKKLTADLKLRPDQVMAIGDAANDLEMLAYAGLGVAMGN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCEEEECCCCCHHHHHHHHCCCEEECC
ADEAIKKVADKVSLSNDQAGVAHAINQFALKKGS
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]