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The map label for this gene is nolA [H]

Identifier: 195977439

GI number: 195977439

Start: 313915

End: 314646

Strand: Direct

Name: nolA [H]

Synonym: Sez_0294

Alternate gene names: 195977439

Gene position: 313915-314646 (Clockwise)

Preceding gene: 195977438

Following gene: 195977440

Centisome position: 15.51

GC content: 40.71

Gene sequence:

>732_bases
GTGAAAGACATGTCTAATATTTACTTAACTGGTGAGCTAGCAAAAGCAGCAGGTGTCACTGTCAGAACAGTGCAATATTA
CGATAAGCGTGGGATTTTGTTGCCTTCCCAGCTTACTGAAGGTGGACGGCGGATTTACACCGAGTCAGATTTGGAGCGAT
TGAAAATCATTTGCTTCTTACGGGACTTAGATTTTTCCATTGAGCAGATTAAGCGCGTGCTAGCAGAAGACAATGTTATG
GCGGTGCTTGACCTCTTGCTGGTGGATCATATCCAACAGCTGGAACAAGACTTAAGGACGAAAAAGCATCAGCTTGACAC
AGCTGTCAAGCTTTTGTCAGGTATTCGCTGCTCATCTAGTCACTCTATCAAAAACCTATCAGACATGTCACTTACCATGA
ACAATCAAAAAGCTTGGCGTCGTTTGCAGTTGAAAATGTTTAGTAATATTGCCCTAGCAATATTGGTTCATGTGATGTTA
GTGTTACTAACTAGCTATTTTCATCTATCTTGGTTGGTATGGATAGAGGCTCCACTATGGATAATCTTTTTTACTTTATT
GATCGTTTATTTTCGTAAACAATTTGAGTACCTATGTCCAAATTGTCATACTATTTTTGAACCAGACTTTAAAGAGTTTG
CCTTGGCAGGTCACACGCCAAGGACTCGCAGGCTGACCTGTCCTCATTGCCATCAAAAATCTTACTGCCTTGAATTGGCC
AAGGAAAAATAA

Upstream 100 bases:

>100_bases
GACTAGCAGCGCTAGTCATTTCTCTGAAAAAGAAAAATGACCTAAGGTCAGGGCTTGCTTGTGACCTTGGGTCATATTCT
ATAATGAGGACAGAAAGGAG

Downstream 100 bases:

>100_bases
TGGAAAATCTCCGCTGGATACTGAACTGCCCCCCAAAAGTTAGACATAAAATCTAACAATTGGGGGGCTATTTTTATGAC
ATTGAGTTATGAAGACAAGG

Product: transcriptional regulator, MerR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MKDMSNIYLTGELAKAAGVTVRTVQYYDKRGILLPSQLTEGGRRIYTESDLERLKIICFLRDLDFSIEQIKRVLAEDNVM
AVLDLLLVDHIQQLEQDLRTKKHQLDTAVKLLSGIRCSSSHSIKNLSDMSLTMNNQKAWRRLQLKMFSNIALAILVHVML
VLLTSYFHLSWLVWIEAPLWIIFFTLLIVYFRKQFEYLCPNCHTIFEPDFKEFALAGHTPRTRRLTCPHCHQKSYCLELA
KEK

Sequences:

>Translated_243_residues
MKDMSNIYLTGELAKAAGVTVRTVQYYDKRGILLPSQLTEGGRRIYTESDLERLKIICFLRDLDFSIEQIKRVLAEDNVM
AVLDLLLVDHIQQLEQDLRTKKHQLDTAVKLLSGIRCSSSHSIKNLSDMSLTMNNQKAWRRLQLKMFSNIALAILVHVML
VLLTSYFHLSWLVWIEAPLWIIFFTLLIVYFRKQFEYLCPNCHTIFEPDFKEFALAGHTPRTRRLTCPHCHQKSYCLELA
KEK
>Mature_243_residues
MKDMSNIYLTGELAKAAGVTVRTVQYYDKRGILLPSQLTEGGRRIYTESDLERLKIICFLRDLDFSIEQIKRVLAEDNVM
AVLDLLLVDHIQQLEQDLRTKKHQLDTAVKLLSGIRCSSSHSIKNLSDMSLTMNNQKAWRRLQLKMFSNIALAILVHVML
VLLTSYFHLSWLVWIEAPLWIIFFTLLIVYFRKQFEYLCPNCHTIFEPDFKEFALAGHTPRTRRLTCPHCHQKSYCLELA
KEK

Specific function: Involved in genotype-specific nodulation of soybeans [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789687, Length=121, Percent_Identity=34.7107438016529, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 28364; Mature: 28364

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDMSNIYLTGELAKAAGVTVRTVQYYDKRGILLPSQLTEGGRRIYTESDLERLKIICFL
CCCCCCEEEEEHHHHHCCCEEEEHHHHCCCCCCCCHHHCCCCCEECCHHHHHHHHHHHHH
RDLDFSIEQIKRVLAEDNVMAVLDLLLVDHIQQLEQDLRTKKHQLDTAVKLLSGIRCSSS
HHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
HSIKNLSDMSLTMNNQKAWRRLQLKMFSNIALAILVHVMLVLLTSYFHLSWLVWIEAPLW
CCCCCCHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIFFTLLIVYFRKQFEYLCPNCHTIFEPDFKEFALAGHTPRTRRLTCPHCHQKSYCLELA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
KEK
CCC
>Mature Secondary Structure
MKDMSNIYLTGELAKAAGVTVRTVQYYDKRGILLPSQLTEGGRRIYTESDLERLKIICFL
CCCCCCEEEEEHHHHHCCCEEEEHHHHCCCCCCCCHHHCCCCCEECCHHHHHHHHHHHHH
RDLDFSIEQIKRVLAEDNVMAVLDLLLVDHIQQLEQDLRTKKHQLDTAVKLLSGIRCSSS
HHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
HSIKNLSDMSLTMNNQKAWRRLQLKMFSNIALAILVHVMLVLLTSYFHLSWLVWIEAPLW
CCCCCCHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIFFTLLIVYFRKQFEYLCPNCHTIFEPDFKEFALAGHTPRTRRLTCPHCHQKSYCLELA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
KEK
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8631662 [H]