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The map label for this gene is jag [H]

Identifier: 195977385

GI number: 195977385

Start: 261434

End: 262333

Strand: Direct

Name: jag [H]

Synonym: Sez_0238

Alternate gene names: 195977385

Gene position: 261434-262333 (Clockwise)

Preceding gene: 195977384

Following gene: 195977386

Centisome position: 12.92

GC content: 43.67

Gene sequence:

>900_bases
ATGGTATTGTTTACAGGTAAGACTGTTGAAGAAGCAATTGAAAAAGGACTTCAAGAGTTGGGGTTGTCACGTCTAAAAGC
ACATATCAAGGTGATTTCAAAGGAGAAAAAAGGCTTTTTAGGCTTTGGTAAAAAGCCAGCTCAGGTTGATATTGAAGGCA
TTAATGAAAAAACAGTCTATAAGGCTGATAAAAAAGCCGTACGTGGTGTTCCAGAGGAGATCAACCGTCAAAATGCACCG
GTTGTTAACCCTGATGAGGTGGAGCTTGAGGAGTTAAAGGCCGTCCGATCAGAAGGCAAAAGGGCTGCTCAGTCTGTTGC
TCATCAGTCAATAAATCCATCAAGCACGGATCAGTCAGTCCCTGCTCAGTCAAAGGCGCAGCCCGCGTTATCAGCTGCTG
GTATGAGTCAGCTTGATCCAGCTGCAGCGGATACGAGTAAGGATATTGAGCTAGCCGCACAGGAGGTTTCTGATTATGTG
ACCAAGATTATCTATGAGATGGATATTGAAGCCTCTATTGAGAGGACCAACAATCGTCGTCAGATCAATCTTCAGATAGA
GACACCAGAGGCAGGTCGTGTTATTGGCTATCATGGTAAGGTTTTGAAATCACTGCAATTGCTGGCCCAAAATTTCTTAC
ATGACCGCTATTCTAAGAATTTTTCTGTCTCCTTGAATGTTCATGATTATGTAGAGCATCGGACAGAGACCTTGATTGAC
TTTACCAAAAAGGTATCCAAGCGTGTGCTTGAGTCTGGTCAGGATTATACCATGGATCCTATGAGTAACAGCGAGCGAAA
GATTGTTCATAAAACAGTTTCTGCTATTGATGGGGTTGAGAGCTATTCAGAGGGCAACGACCCTAATCGCTATGTCGTTG
TCTCACTAATCCACGACTAG

Upstream 100 bases:

>100_bases
TTGCCGAAAGGCAGCGTTTAGCAGATGAAGAAAAAGAGCGTCGAGCTAAGGAACGTCGCGCTCGTAAGAGAGCAATGAAA
AGAAAATAGGAGTTTAGGAT

Downstream 100 bases:

>100_bases
TATCATCAAAGAGGCTCTTTGTGTCTTTTTGTCAACTGTAGTGGGCGACTTATAGCTAAAGACGAGAGGAGACAGCTGTT
GTCTTCTCTTTTGTCATGTT

Product: Jag protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MVLFTGKTVEEAIEKGLQELGLSRLKAHIKVISKEKKGFLGFGKKPAQVDIEGINEKTVYKADKKAVRGVPEEINRQNAP
VVNPDEVELEELKAVRSEGKRAAQSVAHQSINPSSTDQSVPAQSKAQPALSAAGMSQLDPAAADTSKDIELAAQEVSDYV
TKIIYEMDIEASIERTNNRRQINLQIETPEAGRVIGYHGKVLKSLQLLAQNFLHDRYSKNFSVSLNVHDYVEHRTETLID
FTKKVSKRVLESGQDYTMDPMSNSERKIVHKTVSAIDGVESYSEGNDPNRYVVVSLIHD

Sequences:

>Translated_299_residues
MVLFTGKTVEEAIEKGLQELGLSRLKAHIKVISKEKKGFLGFGKKPAQVDIEGINEKTVYKADKKAVRGVPEEINRQNAP
VVNPDEVELEELKAVRSEGKRAAQSVAHQSINPSSTDQSVPAQSKAQPALSAAGMSQLDPAAADTSKDIELAAQEVSDYV
TKIIYEMDIEASIERTNNRRQINLQIETPEAGRVIGYHGKVLKSLQLLAQNFLHDRYSKNFSVSLNVHDYVEHRTETLID
FTKKVSKRVLESGQDYTMDPMSNSERKIVHKTVSAIDGVESYSEGNDPNRYVVVSLIHD
>Mature_299_residues
MVLFTGKTVEEAIEKGLQELGLSRLKAHIKVISKEKKGFLGFGKKPAQVDIEGINEKTVYKADKKAVRGVPEEINRQNAP
VVNPDEVELEELKAVRSEGKRAAQSVAHQSINPSSTDQSVPAQSKAQPALSAAGMSQLDPAAADTSKDIELAAQEVSDYV
TKIIYEMDIEASIERTNNRRQINLQIETPEAGRVIGYHGKVLKSLQLLAQNFLHDRYSKNFSVSLNVHDYVEHRTETLID
FTKKVSKRVLESGQDYTMDPMSNSERKIVHKTVSAIDGVESYSEGNDPNRYVVVSLIHD

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 33172; Mature: 33172

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLFTGKTVEEAIEKGLQELGLSRLKAHIKVISKEKKGFLGFGKKPAQVDIEGINEKTVY
CEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHH
KADKKAVRGVPEEINRQNAPVVNPDEVELEELKAVRSEGKRAAQSVAHQSINPSSTDQSV
HHHHHHHCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PAQSKAQPALSAAGMSQLDPAAADTSKDIELAAQEVSDYVTKIIYEMDIEASIERTNNRR
CCCHHCCHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCE
QINLQIETPEAGRVIGYHGKVLKSLQLLAQNFLHDRYSKNFSVSLNVHDYVEHRTETLID
EEEEEEECCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHH
FTKKVSKRVLESGQDYTMDPMSNSERKIVHKTVSAIDGVESYSEGNDPNRYVVVSLIHD
HHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MVLFTGKTVEEAIEKGLQELGLSRLKAHIKVISKEKKGFLGFGKKPAQVDIEGINEKTVY
CEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHH
KADKKAVRGVPEEINRQNAPVVNPDEVELEELKAVRSEGKRAAQSVAHQSINPSSTDQSV
HHHHHHHCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PAQSKAQPALSAAGMSQLDPAAADTSKDIELAAQEVSDYVTKIIYEMDIEASIERTNNRR
CCCHHCCHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCE
QINLQIETPEAGRVIGYHGKVLKSLQLLAQNFLHDRYSKNFSVSLNVHDYVEHRTETLID
EEEEEEECCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHH
FTKKVSKRVLESGQDYTMDPMSNSERKIVHKTVSAIDGVESYSEGNDPNRYVVVSLIHD
HHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]