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The map label for this gene is araD [H]

Identifier: 195977320

GI number: 195977320

Start: 186652

End: 187368

Strand: Direct

Name: araD [H]

Synonym: Sez_0173

Alternate gene names: 195977320

Gene position: 186652-187368 (Clockwise)

Preceding gene: 195977319

Following gene: 195977321

Centisome position: 9.22

GC content: 47.56

Gene sequence:

>717_bases
ATGGCAAAAGATCTACAAGAAATGCGAGAACGTGTCTGTGCAGCCAACAAGGCCCTACCGCTGCATGGGCTGGTGAAATT
TACCTGGGGCAATGTCTCAGAGGTCTGTCGTGAGCTGGGACGTATCGTCATCAAGCCAAGCGGTGTTGATTATGACCAAT
TAACACCGGAAAATATGGTCGTTACAGACTTAGATGGCACTATTGTTGAGGGAGAGCTGAACCCTTCTTCTGATTTGCCA
ACCCATGTGCAATTATACAAGGCATGGCCAGAGGTTGGCGGGATTGTGCACACACACTCAACAGAAGCGGTTGGCTGGGC
ACAGGCTGGGCGAGATATTCCATTTTATGGGACAACTCATGCTGATTACTTTTATGGTCCCATTCCATGTGCTCGCTCTC
TAACTGCTGATGAGGTTAATGGAGCCTATGAAAAAGAAACGGGTACGGTTATTTTAGAAGAATTTGCTGCTCGTGGTCTT
GATCCTATGGCAGTGCCTGGCATTGTTGTTCGCAATCATGGTCCTTTTACTTGGGGCAAGACGCCTGAATTAGCGGTTTA
TCATTCAGTGGTGCTCGAAGAGGTGGCCAAGATGAACCGCCTGACAGAACAAATCAATCCTCGTGTGGAGCCAGCTCCAG
CCTATATTATGGACAAGCATTACCTTAGAAAGCATGGTCCAAATGCTTATTATGGCCAAAAGGGTAGCCTGCATTAA

Upstream 100 bases:

>100_bases
GTGGTCAGAAAATTGTGAGACTGTAGAGGAGACAAGAGCTGCCATCAAGGAGGCACAGGATTTCCTTTACCCATTGATTG
AGAAAGCGGGGTTACGCTAA

Downstream 100 bases:

>100_bases
GCCAGCAGCTAGTGATTTAGTCTAGCTGCTTAGCTAGGCTTAAGGTCAAGGTTGTTAGCCACTGTTGCAATCTGGGATAA
AAAGCCTATTGTTTTAGAAA

Product: L-ribulose-5-phosphate 4-epimerase

Products: NA

Alternate protein names: Phosphoribulose isomerase [H]

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MAKDLQEMRERVCAANKALPLHGLVKFTWGNVSEVCRELGRIVIKPSGVDYDQLTPENMVVTDLDGTIVEGELNPSSDLP
THVQLYKAWPEVGGIVHTHSTEAVGWAQAGRDIPFYGTTHADYFYGPIPCARSLTADEVNGAYEKETGTVILEEFAARGL
DPMAVPGIVVRNHGPFTWGKTPELAVYHSVVLEEVAKMNRLTEQINPRVEPAPAYIMDKHYLRKHGPNAYYGQKGSLH

Sequences:

>Translated_238_residues
MAKDLQEMRERVCAANKALPLHGLVKFTWGNVSEVCRELGRIVIKPSGVDYDQLTPENMVVTDLDGTIVEGELNPSSDLP
THVQLYKAWPEVGGIVHTHSTEAVGWAQAGRDIPFYGTTHADYFYGPIPCARSLTADEVNGAYEKETGTVILEEFAARGL
DPMAVPGIVVRNHGPFTWGKTPELAVYHSVVLEEVAKMNRLTEQINPRVEPAPAYIMDKHYLRKHGPNAYYGQKGSLH
>Mature_237_residues
AKDLQEMRERVCAANKALPLHGLVKFTWGNVSEVCRELGRIVIKPSGVDYDQLTPENMVVTDLDGTIVEGELNPSSDLPT
HVQLYKAWPEVGGIVHTHSTEAVGWAQAGRDIPFYGTTHADYFYGPIPCARSLTADEVNGAYEKETGTVILEEFAARGLD
PMAVPGIVVRNHGPFTWGKTPELAVYHSVVLEEVAKMNRLTEQINPRVEPAPAYIMDKHYLRKHGPNAYYGQKGSLH

Specific function: Probable Pentulose-5-Phosphate-4-Epimerase. Probably Involved In A Metabolic Pathway With Sgah And Sgau. [C]

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. AraD/FucA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790642, Length=230, Percent_Identity=55.2173913043478, Blast_Score=271, Evalue=2e-74,
Organism=Escherichia coli, GI1786247, Length=230, Percent_Identity=56.0869565217391, Blast_Score=269, Evalue=2e-73,
Organism=Escherichia coli, GI1790008, Length=230, Percent_Identity=54.7826086956522, Blast_Score=267, Evalue=5e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303
- InterPro:   IPR004661 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: =5.1.3.4 [H]

Molecular weight: Translated: 26337; Mature: 26206

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKDLQEMRERVCAANKALPLHGLVKFTWGNVSEVCRELGRIVIKPSGVDYDQLTPENMV
CCHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHCCEEECCCCCCHHHCCCCCEE
VTDLDGTIVEGELNPSSDLPTHVQLYKAWPEVGGIVHTHSTEAVGWAQAGRDIPFYGTTH
EEECCCEEEECCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCHHHHHHCCCCCCCCCCCC
ADYFYGPIPCARSLTADEVNGAYEKETGTVILEEFAARGLDPMAVPGIVVRNHGPFTWGK
CCCEECCCCHHCCCCHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCC
TPELAVYHSVVLEEVAKMNRLTEQINPRVEPAPAYIMDKHYLRKHGPNAYYGQKGSLH
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKDLQEMRERVCAANKALPLHGLVKFTWGNVSEVCRELGRIVIKPSGVDYDQLTPENMV
CHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHCCEEECCCCCCHHHCCCCCEE
VTDLDGTIVEGELNPSSDLPTHVQLYKAWPEVGGIVHTHSTEAVGWAQAGRDIPFYGTTH
EEECCCEEEECCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCHHHHHHCCCCCCCCCCCC
ADYFYGPIPCARSLTADEVNGAYEKETGTVILEEFAARGLDPMAVPGIVVRNHGPFTWGK
CCCEECCCCHHCCCCHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCC
TPELAVYHSVVLEEVAKMNRLTEQINPRVEPAPAYIMDKHYLRKHGPNAYYGQKGSLH
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA