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The map label for this gene is licR [H]

Identifier: 195977321

GI number: 195977321

Start: 187665

End: 189317

Strand: Direct

Name: licR [H]

Synonym: Sez_0174

Alternate gene names: 195977321

Gene position: 187665-189317 (Clockwise)

Preceding gene: 195977320

Following gene: 195977322

Centisome position: 9.27

GC content: 42.47

Gene sequence:

>1653_bases
ATGAACGTGATTATTTTGGATAAAAAAAGCTATGATCTGCTGTCATATCTGATTCGATTGAAGGAGGCTGAGACAGTCAT
GGCGATTTCAGCTGCCTTGGGTCAGTCGCGTCGTAAAATTTACTATCATCTTGATAAAATTAACGAAGCACTGCCCAGCC
ATGTTGCTCAAATTGTTTCCTATCCTCGTGTGGGGATCCTGTTAAATAGTGAGCAAAAGGCTGCCTGCCAACAGCTCCTC
AATGAAGTAACAGATTATCACTATGTTATGAAGGGTGATGAGCGCAGGAGCTTATCAGCGATTTATATTGCAGTGGCAAC
AGAGCGGGTGACGCTGGATAAGCTCATGATGATTAATGATGTTTCCAGAAACACCATCTTAAATGATCTTGCTGAACTGA
GAGAGGAATTGTCTAGCTACAACAATAAGATTCAGCTGCATGCCACCAAGGCCAAGGGCTATTACTTTGACTGTCACCCT
ATGGCTTTGATTCAGTACCTTTACAAGGTATTGGCAGGTGTTTATCAGGGAGGCAATAGCAGCTTTATTGAGCTTTTTGA
TCATAAGCTTTCTGAGACACAAGGCTTGTCAGCCTATTTTTCAAAGGAGGTTTTGGATTATTTTCACGAATACCTCTTTT
TGTCTCAGGCTAGCCTAGGCAAAACGATTAATATTCAGGATAGTCAGTTTATGCTGCAAATTCTTCCTTTTATCCTGCTT
AGCTACCGCAATATGCAATTGCATTCGGAAACTAAAACAGCGCTTAAAAGTGATTTTAACCTGATTTGGAAGCGCAAGGA
ATACCAGATTGCTAAGGCACTGGCTAGTGAGCTTTACCACAATTTCAAGCTGCATTTAGATGACATTGAGGTAGGTATGG
TAGCCATGCTGATGCTATCCTTTAGAAAGGATCAGGATCACCATGTTGAAAGTCAGGATTACGAGCAGATGCGAGCTACC
ATTGGTGACTTTATTGACCAGCTGGAGCTGCGCTATCAGCTGCATTTTACCCACAAAAAGGATTTGCTTAGACAGCTGAC
CAGGCATTGCAAGGCCCTTGTTTATCGAAAGGCCTATGGGATTTTTTCGATCAATCCTTTAACAGACCATATTAAGGAAA
AATACGAGGAGCTCTTTGCTATGGCTCAATCCTGTGCTGTAATCCTAGAGCAGGCTTGGCAGATCCGTCTAACAGATGAT
GACGTGGCTTATCTAACGATTCATCTAGGAGGAGAGCTGCGCCATAGCCATGCTGATCAGGAAAAGACCAAGCTTGTTAT
CGTTTCAGATGATGGCATTGGGATTCAAAAGCTGCTGTTGAAGCAGTGCCAGCGTTATTTGCCCAATTGTCAAATCGAGG
CTGTCTTTACAACAGAGCAATACCAGAGTGTCTTTGATTTGATGTCTGTTGACATTGTGGTATCAACAACAGACGCACTG
GAGGCTCTTGTTCCCATACTGATTGTCAATCCTATTTTGAGCGATGATGACATTATTAGATTGATCCGTTTTTCAAAGCA
GGGGCGCTTGAGTGATAGCTCTCGTTTTTCCCTTGAGCTAGAAAAGGCGATCGAGACCATTGTTAAGGACGATGCTGACC
GCTATGCCTTGAAAACAAAAATTGAAAAGCTCATTCATCACGAATTATTGTAA

Upstream 100 bases:

>100_bases
CTATTTAGAGACTGACTTTGACCTAGTATTCTTTCCTACAGATAGGTAAAATGGTAAACTGATAAAGCTGTGTGGTCGTG
ATGTTTCATAGAAGGGAGGT

Downstream 100 bases:

>100_bases
GCTACTAGCTTGCCTATTGATAAGGACCCCTCAGCTGTCTATTGGTTTAGGAGAAGGCTGGGGCTTTTAGTTTATCTTGA
GCCAAAATTCAGTCCAGTTT

Product: transcriptional antiterminator with PTS regulation domain

Products: NA

Alternate protein names: Putative phosphotransferase enzyme IIB component; Putative PTS system EIIB component; Putative phosphotransferase enzyme IIA component; Putative PTS system EIIA component [H]

Number of amino acids: Translated: 550; Mature: 550

Protein sequence:

>550_residues
MNVIILDKKSYDLLSYLIRLKEAETVMAISAALGQSRRKIYYHLDKINEALPSHVAQIVSYPRVGILLNSEQKAACQQLL
NEVTDYHYVMKGDERRSLSAIYIAVATERVTLDKLMMINDVSRNTILNDLAELREELSSYNNKIQLHATKAKGYYFDCHP
MALIQYLYKVLAGVYQGGNSSFIELFDHKLSETQGLSAYFSKEVLDYFHEYLFLSQASLGKTINIQDSQFMLQILPFILL
SYRNMQLHSETKTALKSDFNLIWKRKEYQIAKALASELYHNFKLHLDDIEVGMVAMLMLSFRKDQDHHVESQDYEQMRAT
IGDFIDQLELRYQLHFTHKKDLLRQLTRHCKALVYRKAYGIFSINPLTDHIKEKYEELFAMAQSCAVILEQAWQIRLTDD
DVAYLTIHLGGELRHSHADQEKTKLVIVSDDGIGIQKLLLKQCQRYLPNCQIEAVFTTEQYQSVFDLMSVDIVVSTTDAL
EALVPILIVNPILSDDDIIRLIRFSKQGRLSDSSRFSLELEKAIETIVKDDADRYALKTKIEKLIHHELL

Sequences:

>Translated_550_residues
MNVIILDKKSYDLLSYLIRLKEAETVMAISAALGQSRRKIYYHLDKINEALPSHVAQIVSYPRVGILLNSEQKAACQQLL
NEVTDYHYVMKGDERRSLSAIYIAVATERVTLDKLMMINDVSRNTILNDLAELREELSSYNNKIQLHATKAKGYYFDCHP
MALIQYLYKVLAGVYQGGNSSFIELFDHKLSETQGLSAYFSKEVLDYFHEYLFLSQASLGKTINIQDSQFMLQILPFILL
SYRNMQLHSETKTALKSDFNLIWKRKEYQIAKALASELYHNFKLHLDDIEVGMVAMLMLSFRKDQDHHVESQDYEQMRAT
IGDFIDQLELRYQLHFTHKKDLLRQLTRHCKALVYRKAYGIFSINPLTDHIKEKYEELFAMAQSCAVILEQAWQIRLTDD
DVAYLTIHLGGELRHSHADQEKTKLVIVSDDGIGIQKLLLKQCQRYLPNCQIEAVFTTEQYQSVFDLMSVDIVVSTTDAL
EALVPILIVNPILSDDDIIRLIRFSKQGRLSDSSRFSLELEKAIETIVKDDADRYALKTKIEKLIHHELL
>Mature_550_residues
MNVIILDKKSYDLLSYLIRLKEAETVMAISAALGQSRRKIYYHLDKINEALPSHVAQIVSYPRVGILLNSEQKAACQQLL
NEVTDYHYVMKGDERRSLSAIYIAVATERVTLDKLMMINDVSRNTILNDLAELREELSSYNNKIQLHATKAKGYYFDCHP
MALIQYLYKVLAGVYQGGNSSFIELFDHKLSETQGLSAYFSKEVLDYFHEYLFLSQASLGKTINIQDSQFMLQILPFILL
SYRNMQLHSETKTALKSDFNLIWKRKEYQIAKALASELYHNFKLHLDDIEVGMVAMLMLSFRKDQDHHVESQDYEQMRAT
IGDFIDQLELRYQLHFTHKKDLLRQLTRHCKALVYRKAYGIFSINPLTDHIKEKYEELFAMAQSCAVILEQAWQIRLTDD
DVAYLTIHLGGELRHSHADQEKTKLVIVSDDGIGIQKLLLKQCQRYLPNCQIEAVFTTEQYQSVFDLMSVDIVVSTTDAL
EALVPILIVNPILSDDDIIRLIRFSKQGRLSDSSRFSLELEKAIETIVKDDADRYALKTKIEKLIHHELL

Specific function: Positive regulator of the licABCH operon [H]

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIB type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013196
- InterPro:   IPR007737
- InterPro:   IPR011608
- InterPro:   IPR016152
- InterPro:   IPR002178
- InterPro:   IPR013011
- InterPro:   IPR003501
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08279 HTH_11; PF05043 Mga; PF00874 PRD; PF00359 PTS_EIIA_2; PF02302 PTS_IIB [H]

EC number: =2.7.1.69 [H]

Molecular weight: Translated: 63586; Mature: 63586

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS51099 PTS_EIIB_TYPE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVIILDKKSYDLLSYLIRLKEAETVMAISAALGQSRRKIYYHLDKINEALPSHVAQIVS
CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
YPRVGILLNSEQKAACQQLLNEVTDYHYVMKGDERRSLSAIYIAVATERVTLDKLMMIND
CCCEEEEECCCHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEEEEEECHHHHHHHHHHHC
VSRNTILNDLAELREELSSYNNKIQLHATKAKGYYFDCHPMALIQYLYKVLAGVYQGGNS
CHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEECCHHHHHHHHHHHHHHHHCCCCC
SFIELFDHKLSETQGLSAYFSKEVLDYFHEYLFLSQASLGKTINIQDSQFMLQILPFILL
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHH
SYRNMQLHSETKTALKSDFNLIWKRKEYQIAKALASELYHNFKLHLDDIEVGMVAMLMLS
HHCCCCHHHHHHHHHHHCHHHHEEHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHH
FRKDQDHHVESQDYEQMRATIGDFIDQLELRYQLHFTHKKDLLRQLTRHCKALVYRKAYG
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHCC
IFSINPLTDHIKEKYEELFAMAQSCAVILEQAWQIRLTDDDVAYLTIHLGGELRHSHADQ
EEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEEEECCCHHHCCCCC
EKTKLVIVSDDGIGIQKLLLKQCQRYLPNCQIEAVFTTEQYQSVFDLMSVDIVVSTTDAL
CCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHEEEECHHHH
EALVPILIVNPILSDDDIIRLIRFSKQGRLSDSSRFSLELEKAIETIVKDDADRYALKTK
HHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHEEEHHHHHHHHHHCCCHHHHHHHH
IEKLIHHELL
HHHHHHHHCC
>Mature Secondary Structure
MNVIILDKKSYDLLSYLIRLKEAETVMAISAALGQSRRKIYYHLDKINEALPSHVAQIVS
CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
YPRVGILLNSEQKAACQQLLNEVTDYHYVMKGDERRSLSAIYIAVATERVTLDKLMMIND
CCCEEEEECCCHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEEEEEECHHHHHHHHHHHC
VSRNTILNDLAELREELSSYNNKIQLHATKAKGYYFDCHPMALIQYLYKVLAGVYQGGNS
CHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEECCHHHHHHHHHHHHHHHHCCCCC
SFIELFDHKLSETQGLSAYFSKEVLDYFHEYLFLSQASLGKTINIQDSQFMLQILPFILL
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHH
SYRNMQLHSETKTALKSDFNLIWKRKEYQIAKALASELYHNFKLHLDDIEVGMVAMLMLS
HHCCCCHHHHHHHHHHHCHHHHEEHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHH
FRKDQDHHVESQDYEQMRATIGDFIDQLELRYQLHFTHKKDLLRQLTRHCKALVYRKAYG
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHCC
IFSINPLTDHIKEKYEELFAMAQSCAVILEQAWQIRLTDDDVAYLTIHLGGELRHSHADQ
EEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEEEECCCHHHCCCCC
EKTKLVIVSDDGIGIQKLLLKQCQRYLPNCQIEAVFTTEQYQSVFDLMSVDIVVSTTDAL
CCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHEEEECHHHH
EALVPILIVNPILSDDDIIRLIRFSKQGRLSDSSRFSLELEKAIETIVKDDADRYALKTK
HHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHEEEHHHHHHHHHHCCCHHHHHHHH
IEKLIHHELL
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8990303; 8969509; 9384377; 10438772 [H]