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The map label for this gene is ygbD [C]

Identifier: 195952974

GI number: 195952974

Start: 534541

End: 535686

Strand: Direct

Name: ygbD [C]

Synonym: HY04AAS1_0599

Alternate gene names: 195952974

Gene position: 534541-535686 (Clockwise)

Preceding gene: 195952973

Following gene: 195952975

Centisome position: 34.28

GC content: 40.49

Gene sequence:

>1146_bases
ATGGCAAAGCACGTTGTAATAGTAGGTGGTGGAGTAGCTGGCACAATAATAGCTAACCTTTTGGCAAGAGGCTTAAAAGA
GGAGCTATCAAAGGCTGAAGTTGTGATAACGATGGTCAGCAAAGATGATAAGCATGTTTACCAACCGGGGTTTTTATATG
TGCTCTTTGATAAAATGAGACCAGATGAGCTTATAAGAGACCAAAGAAGCTTGTTGGCTCCTTCTATCATCTTCCACCAC
GATACGGTGGTAGGTATAGATCCAAAAGCGTGTGAAGTACATACGGAAAAAGGTAAAAAGCTAAAGTATGACTACCTTGT
GATAGCCACAGGTTCAAGACCAATGCCAGAGTTAATACCAGGGCTCAAAGAACACGGAAACATGTTTTACACGTTAGAAA
GTGCAACAGAGTTACGAGAAAAACTAAGAAAGTTTGAAAAGGGTAGGATAGCCATAGCTATGGGGGTACCTCATAAGTGC
CCTGTAGCTCCTTTCGAGGTAACATTTATGTTGGATGATTATTTTAACAAGAAAGGTATTAGGGATAAAGTAGAAATATA
TTATACCTATCCCATAGGTAGAATACACGCGCTAGAGCCAGTAGCCCAGTGGGGTGTCCCAGAGTTTGAAAGAAGAGGCA
TAAAATACGAAACGCTGTTTAACATGGAAAAAGTGGAAGCTCATAATGGGTCCGTAGCTGTTCACAGCGCAGAAGGCTCT
ACCGTTGAATGTGATTTGCTTATTACAATACCTTCTCACAGGGGAGCCCAAGCTATTATAGATTCTGGTATTTCAAATGA
TGGTTGGGTACCAACAAATAGACATAGCCTAAAATATGAAGGTTATGAAAACGTTTACGTGGCTGGAGATACCACAAACT
TACCTATTTCGAAAGCAGGTTCTACCGCTCACTTTGAATCTGATGTAGTAGCAGATAACCTTATAGCTGAAATAAAAGAA
GGTCATCCAGCCAGAGACTACGACGGTAAAGTCATGTGCTTTATAGAAACAGGTTTTGATAAAGGTACCTATATACACTT
TAACTATACCACTCCGCCAAGTCCTATGCCACCATCCAAAATGATACACTGGTTGAAGTTAGGATATAACCGTATGTATT
GGTTAACTGCAAGAGGTGTCTTGTAA

Upstream 100 bases:

>100_bases
AAAAAAAGTAGGTCATGAAATGGTAGGAGTAGAAGAAAAAGATGGATATTGGTCCATCGTTGTAAAAAGAACCAAGTAAG
CTAAAAAGGAGGTAAAGCAT

Downstream 100 bases:

>100_bases
GGAGGGATTTTATGGAAGAGGTTTTGGACGTAGCTACAAATGCTTTGACAGACTCAATGGTGGAAAGGCTTGCAAACAGT
GTATCCACCATAGCAGAGTT

Product: FAD-dependent pyridine nucleotide-disulfide oxidoreductase

Products: NAD; reduced flavorubredoxin; H2O [C]

Alternate protein names: FAD-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; Oxidoreductase; NAD(FAD)-Dependent Dehydrogenase; Pyridine Nucleotide-Disulphide Oxidoreductase; SulfideQuinone Oxidoreductase; Sulfide-Quinone Reductase; Sulfide Dehydrogenase Flavoprotein Subunit; Twin-Arginine Translocation Pathway Signal; Fad-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; Sulfide Dehydrogenase; FAD-Dependent Pyridine Nucleotide-Disulphideoxido Reductase; Sulfide-Quinone Oxidoreductase; Flavoprotein Reductase; Dehydrogenase; NADH Dehydrogenase FAD-Containing Subunit; Sulfide Quinone Oxidoreductase-Like Protein; Flavoprotein Reductase Conjectural; Pyridine Nucleotide-Disulfide Oxidoreductase; Sulfide Dehydrogenase Flavoprotein; Anti-Anti-Sigma Regulatory Factor; Filamentous Hemagglutinin; NAD(Fad)-Dependent Dehydrogenase Protein; Oxidoreductase Family Protein; Flavoprotein Reductase-Like Protein; Oxidoreductase Pyridine Nucleotide-Disulphide Family; Pyridine Nucleotide-Disulphide Oxidoreductase Class-II; Sulfide-Quinone Reductase Related Protein; Sulfide Dehydrogenase Flavoprotein Chain; Dehydrogenase/Reductase; Sulfide Quinone Reductase; Sulfide Quinone-Rductase; Sulphide Quinone Reductase; Oxidoreductase FAD-Dependent; Pyridine Nucleotide-Disulfide Family Oxidoreductase; Pyridine Nucleotide-Disulfide Oxidoreductase Family Protein; SulfideQuinone Reductase; NAD(FAD)-Dependent Dehydrogenase-Like Protein; Pyridine Nucleotide-Disulfide Oxidoreductase Family; Sulfide Dehydrogenase Related Protein

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MAKHVVIVGGGVAGTIIANLLARGLKEELSKAEVVITMVSKDDKHVYQPGFLYVLFDKMRPDELIRDQRSLLAPSIIFHH
DTVVGIDPKACEVHTEKGKKLKYDYLVIATGSRPMPELIPGLKEHGNMFYTLESATELREKLRKFEKGRIAIAMGVPHKC
PVAPFEVTFMLDDYFNKKGIRDKVEIYYTYPIGRIHALEPVAQWGVPEFERRGIKYETLFNMEKVEAHNGSVAVHSAEGS
TVECDLLITIPSHRGAQAIIDSGISNDGWVPTNRHSLKYEGYENVYVAGDTTNLPISKAGSTAHFESDVVADNLIAEIKE
GHPARDYDGKVMCFIETGFDKGTYIHFNYTTPPSPMPPSKMIHWLKLGYNRMYWLTARGVL

Sequences:

>Translated_381_residues
MAKHVVIVGGGVAGTIIANLLARGLKEELSKAEVVITMVSKDDKHVYQPGFLYVLFDKMRPDELIRDQRSLLAPSIIFHH
DTVVGIDPKACEVHTEKGKKLKYDYLVIATGSRPMPELIPGLKEHGNMFYTLESATELREKLRKFEKGRIAIAMGVPHKC
PVAPFEVTFMLDDYFNKKGIRDKVEIYYTYPIGRIHALEPVAQWGVPEFERRGIKYETLFNMEKVEAHNGSVAVHSAEGS
TVECDLLITIPSHRGAQAIIDSGISNDGWVPTNRHSLKYEGYENVYVAGDTTNLPISKAGSTAHFESDVVADNLIAEIKE
GHPARDYDGKVMCFIETGFDKGTYIHFNYTTPPSPMPPSKMIHWLKLGYNRMYWLTARGVL
>Mature_380_residues
AKHVVIVGGGVAGTIIANLLARGLKEELSKAEVVITMVSKDDKHVYQPGFLYVLFDKMRPDELIRDQRSLLAPSIIFHHD
TVVGIDPKACEVHTEKGKKLKYDYLVIATGSRPMPELIPGLKEHGNMFYTLESATELREKLRKFEKGRIAIAMGVPHKCP
VAPFEVTFMLDDYFNKKGIRDKVEIYYTYPIGRIHALEPVAQWGVPEFERRGIKYETLFNMEKVEAHNGSVAVHSAEGST
VECDLLITIPSHRGAQAIIDSGISNDGWVPTNRHSLKYEGYENVYVAGDTTNLPISKAGSTAHFESDVVADNLIAEIKEG
HPARDYDGKVMCFIETGFDKGTYIHFNYTTPPSPMPPSKMIHWLKLGYNRMYWLTARGVL

Specific function: Unknown

COG id: COG0446

COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI10864011, Length=329, Percent_Identity=24.0121580547112, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI115534373, Length=327, Percent_Identity=23.2415902140673, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24657386, Length=351, Percent_Identity=29.0598290598291, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24657391, Length=351, Percent_Identity=29.0598290598291, Blast_Score=117, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42740; Mature: 42609

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKHVVIVGGGVAGTIIANLLARGLKEELSKAEVVITMVSKDDKHVYQPGFLYVLFDKMR
CCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEECCCEEEEEEECCC
PDELIRDQRSLLAPSIIFHHDTVVGIDPKACEVHTEKGKKLKYDYLVIATGSRPMPELIP
HHHHHHHHHHHHCCEEEEECCEEEECCCCCEEEECCCCCEEEEEEEEEEECCCCCHHHHC
GLKEHGNMFYTLESATELREKLRKFEKGRIAIAMGVPHKCPVAPFEVTFMLDDYFNKKGI
CHHHCCCEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEEHHCCCCCC
RDKVEIYYTYPIGRIHALEPVAQWGVPEFERRGIKYETLFNMEKVEAHNGSVAVHSAEGS
CCEEEEEEECCCCCEEECCHHHHCCCCHHHHCCCEEEHCCCHHHHCCCCCCEEEECCCCC
TVECDLLITIPSHRGAQAIIDSGISNDGWVPTNRHSLKYEGYENVYVAGDTTNLPISKAG
EEEEEEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCC
STAHFESDVVADNLIAEIKEGHPARDYDGKVMCFIETGFDKGTYIHFNYTTPPSPMPPSK
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCHHH
MIHWLKLGYNRMYWLTARGVL
HHHHHHHCCCEEEEEEECCCC
>Mature Secondary Structure 
AKHVVIVGGGVAGTIIANLLARGLKEELSKAEVVITMVSKDDKHVYQPGFLYVLFDKMR
CCEEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEECCCEEEEEEECCC
PDELIRDQRSLLAPSIIFHHDTVVGIDPKACEVHTEKGKKLKYDYLVIATGSRPMPELIP
HHHHHHHHHHHHCCEEEEECCEEEECCCCCEEEECCCCCEEEEEEEEEEECCCCCHHHHC
GLKEHGNMFYTLESATELREKLRKFEKGRIAIAMGVPHKCPVAPFEVTFMLDDYFNKKGI
CHHHCCCEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEEHHCCCCCC
RDKVEIYYTYPIGRIHALEPVAQWGVPEFERRGIKYETLFNMEKVEAHNGSVAVHSAEGS
CCEEEEEEECCCCCEEECCHHHHCCCCHHHHCCCEEEHCCCHHHHCCCCCCEEEECCCCC
TVECDLLITIPSHRGAQAIIDSGISNDGWVPTNRHSLKYEGYENVYVAGDTTNLPISKAG
EEEEEEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCC
STAHFESDVVADNLIAEIKEGHPARDYDGKVMCFIETGFDKGTYIHFNYTTPPSPMPPSK
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCHHH
MIHWLKLGYNRMYWLTARGVL
HHHHHHHCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; oxidized flavorubredoxin; O2 [C]

Specific reaction: NADH + oxidized flavorubredoxin + O2 = NAD + reduced flavorubredoxin + H2O [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA