| Definition | Hydrogenobaculum sp. Y04AAS1 chromosome, complete genome. |
|---|---|
| Accession | NC_011126 |
| Length | 1,559,514 |
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The map label for this gene is engD [H]
Identifier: 195952890
GI number: 195952890
Start: 451692
End: 452798
Strand: Direct
Name: engD [H]
Synonym: HY04AAS1_0515
Alternate gene names: 195952890
Gene position: 451692-452798 (Clockwise)
Preceding gene: 195952889
Following gene: 195952891
Centisome position: 28.96
GC content: 35.5
Gene sequence:
>1107_bases ATGCCCCTTAGTTGCGGTATAGTTGGTTTACCGAACGTAGGAAAGTCTACGTTATTTAATGCTCTTATAAAGGCAGCCAA AGCTCAGGCTGCCAATTATCCATTTTGTACAATAGAGCCAAACATAGGCACGGTGGAAGTCCCAGACGAAAGGCTTTACG AAATAGCAAGGTTAGAAAACTCTGCCAAAGTAGTGCCAACATTTATAGAGTTTGTGGATATAGCTGGTTTGGTAAGGGGT GCAAGTAAGGGCGAGGGCCTTGGAAATCAATTTTTATCACACATAAGAAATGTAGATGCCATAGTACAAGTGGTAAGATG TTTTGAAGATGAGAACATTACACACGTTGAAGGCTCAGTGAATCCCATAAGGGATATAGAAATTATAGATTTAGAGCTTA TAGCAAAAGACTTAGAATCCGTACAAAAAACTATTCAAAAAATAGAAAAAATTGCAAAAGGCGGAAATCAAGAAGCAAAA CAAGAGTTAGAATACTTAAAAAAGTTTGAAGAGATTTTAAACCCAATGATTCCCTTAAGAAGGGCTAATCTCACAGAAGA AGAGAAAGAATATGCAAAAAATAAGCTATTTCTTCTTAGCATTAAACCTACAATGTTTGTAGCAAATTTATCTGAAGAAG AAATTCAAGGACCTACTTCCAACAAACATTACAGAAATCTATTGGAATATGCAGAAAAAGAAAATGCTCCAGTAATTCCA GTGTGTGCAAAGCTAGAGTCAGAAATGATTGATATGTCAAAAGAAGAAGTTCAAGAAATGTTAAACCTTTATGGTTTAAA AGAAACCGGCTTATCTTCTATTATTAAAAGCGGGTATAAACTTTTGGGGCTTATAACGTTTTTTACCGCTGGTCCAAAAG AATCTAGGGCTTGGGCTATTGCAAAAGATACCAAAGCTCAAAAGGCTGCTGGCAAAATACATTCTGATATAGAAAGAGGC TTTATAGCTGCAGAAGTAATAAACTACGATGACTATATAAAAGTTAAGTCCATGACAAAGGCAAAAGAGCAAGGGCTTAT AAGGTTGGAGGGAAAAGACTACATTGTAAAAGATGGTGATATAATATACTTTAGATTCAACGTATAA
Upstream 100 bases:
>100_bases AGTGGCTTCAGCGGCTGCCAACGGTGCTATAGAAGGAGCCAAAAAAGCTTTAGAAGAAGGGGAGAAGAAGGAGCAAAACC AAGGAGAAAAGCAAGAGTAA
Downstream 100 bases:
>100_bases AGAGGTTCTAGTATGAAAATAGTATTTAACAATCAAGAATATGATCTGCAAGCAGGAATAGTTGGTATTGAGCTTTTAAA AGCTTTAAACTTAGATTCAA
Product: GTP-dependent nucleic acid-binding protein EngD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 368; Mature: 367
Protein sequence:
>368_residues MPLSCGIVGLPNVGKSTLFNALIKAAKAQAANYPFCTIEPNIGTVEVPDERLYEIARLENSAKVVPTFIEFVDIAGLVRG ASKGEGLGNQFLSHIRNVDAIVQVVRCFEDENITHVEGSVNPIRDIEIIDLELIAKDLESVQKTIQKIEKIAKGGNQEAK QELEYLKKFEEILNPMIPLRRANLTEEEKEYAKNKLFLLSIKPTMFVANLSEEEIQGPTSNKHYRNLLEYAEKENAPVIP VCAKLESEMIDMSKEEVQEMLNLYGLKETGLSSIIKSGYKLLGLITFFTAGPKESRAWAIAKDTKAQKAAGKIHSDIERG FIAAEVINYDDYIKVKSMTKAKEQGLIRLEGKDYIVKDGDIIYFRFNV
Sequences:
>Translated_368_residues MPLSCGIVGLPNVGKSTLFNALIKAAKAQAANYPFCTIEPNIGTVEVPDERLYEIARLENSAKVVPTFIEFVDIAGLVRG ASKGEGLGNQFLSHIRNVDAIVQVVRCFEDENITHVEGSVNPIRDIEIIDLELIAKDLESVQKTIQKIEKIAKGGNQEAK QELEYLKKFEEILNPMIPLRRANLTEEEKEYAKNKLFLLSIKPTMFVANLSEEEIQGPTSNKHYRNLLEYAEKENAPVIP VCAKLESEMIDMSKEEVQEMLNLYGLKETGLSSIIKSGYKLLGLITFFTAGPKESRAWAIAKDTKAQKAAGKIHSDIERG FIAAEVINYDDYIKVKSMTKAKEQGLIRLEGKDYIVKDGDIIYFRFNV >Mature_367_residues PLSCGIVGLPNVGKSTLFNALIKAAKAQAANYPFCTIEPNIGTVEVPDERLYEIARLENSAKVVPTFIEFVDIAGLVRGA SKGEGLGNQFLSHIRNVDAIVQVVRCFEDENITHVEGSVNPIRDIEIIDLELIAKDLESVQKTIQKIEKIAKGGNQEAKQ ELEYLKKFEEILNPMIPLRRANLTEEEKEYAKNKLFLLSIKPTMFVANLSEEEIQGPTSNKHYRNLLEYAEKENAPVIPV CAKLESEMIDMSKEEVQEMLNLYGLKETGLSSIIKSGYKLLGLITFFTAGPKESRAWAIAKDTKAQKAAGKIHSDIERGF IAAEVINYDDYIKVKSMTKAKEQGLIRLEGKDYIVKDGDIIYFRFNV
Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]
COG id: COG0012
COG function: function code J; Predicted GTPase, probable translation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI58761500, Length=370, Percent_Identity=46.2162162162162, Blast_Score=307, Evalue=1e-83, Organism=Homo sapiens, GI58761502, Length=228, Percent_Identity=39.4736842105263, Blast_Score=146, Evalue=3e-35, Organism=Escherichia coli, GI1787454, Length=368, Percent_Identity=52.445652173913, Blast_Score=377, Evalue=1e-106, Organism=Escherichia coli, GI1789574, Length=137, Percent_Identity=32.1167883211679, Blast_Score=75, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17509631, Length=368, Percent_Identity=43.2065217391304, Blast_Score=290, Evalue=6e-79, Organism=Caenorhabditis elegans, GI17552324, Length=188, Percent_Identity=28.1914893617021, Blast_Score=69, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6319499, Length=372, Percent_Identity=43.5483870967742, Blast_Score=279, Evalue=6e-76, Organism=Saccharomyces cerevisiae, GI6321773, Length=393, Percent_Identity=39.440203562341, Blast_Score=237, Evalue=2e-63, Organism=Saccharomyces cerevisiae, GI6321649, Length=143, Percent_Identity=37.7622377622378, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI24640873, Length=370, Percent_Identity=44.3243243243243, Blast_Score=292, Evalue=3e-79, Organism=Drosophila melanogaster, GI24640877, Length=370, Percent_Identity=44.3243243243243, Blast_Score=292, Evalue=3e-79, Organism=Drosophila melanogaster, GI24640875, Length=370, Percent_Identity=44.3243243243243, Blast_Score=292, Evalue=3e-79, Organism=Drosophila melanogaster, GI24640879, Length=329, Percent_Identity=42.2492401215805, Blast_Score=241, Evalue=6e-64, Organism=Drosophila melanogaster, GI24585318, Length=103, Percent_Identity=39.8058252427184, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI20129375, Length=121, Percent_Identity=35.5371900826446, Blast_Score=69, Evalue=4e-12,
Paralogues:
None
Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012675 - InterPro: IPR004396 - InterPro: IPR013029 - InterPro: IPR006073 - InterPro: IPR002917 - InterPro: IPR012676 - InterPro: IPR023192 [H]
Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]
EC number: NA
Molecular weight: Translated: 41190; Mature: 41059
Theoretical pI: Translated: 5.26; Mature: 5.26
Prosite motif: PS00443 GATASE_TYPE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLSCGIVGLPNVGKSTLFNALIKAAKAQAANYPFCTIEPNIGTVEVPDERLYEIARLEN CCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEECCHHHHHHHHHHCC SAKVVPTFIEFVDIAGLVRGASKGEGLGNQFLSHIRNVDAIVQVVRCFEDENITHVEGSV CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCC NPIRDIEIIDLELIAKDLESVQKTIQKIEKIAKGGNQEAKQELEYLKKFEEILNPMIPLR CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHH RANLTEEEKEYAKNKLFLLSIKPTMFVANLSEEEIQGPTSNKHYRNLLEYAEKENAPVIP HCCCCHHHHHHHHCCEEEEEECCEEEEECCCHHHCCCCCCCHHHHHHHHHHHHCCCCEEH VCAKLESEMIDMSKEEVQEMLNLYGLKETGLSSIIKSGYKLLGLITFFTAGPKESRAWAI HHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE AKDTKAQKAAGKIHSDIERGFIAAEVINYDDYIKVKSMTKAKEQGLIRLEGKDYIVKDGD ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCEEEECCCEEEEECCC IIYFRFNV EEEEEECC >Mature Secondary Structure PLSCGIVGLPNVGKSTLFNALIKAAKAQAANYPFCTIEPNIGTVEVPDERLYEIARLEN CCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEECCHHHHHHHHHHCC SAKVVPTFIEFVDIAGLVRGASKGEGLGNQFLSHIRNVDAIVQVVRCFEDENITHVEGSV CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCC NPIRDIEIIDLELIAKDLESVQKTIQKIEKIAKGGNQEAKQELEYLKKFEEILNPMIPLR CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHH RANLTEEEKEYAKNKLFLLSIKPTMFVANLSEEEIQGPTSNKHYRNLLEYAEKENAPVIP HCCCCHHHHHHHHCCEEEEEECCEEEEECCCHHHCCCCCCCHHHHHHHHHHHHCCCCEEH VCAKLESEMIDMSKEEVQEMLNLYGLKETGLSSIIKSGYKLLGLITFFTAGPKESRAWAI HHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE AKDTKAQKAAGKIHSDIERGFIAAEVINYDDYIKVKSMTKAKEQGLIRLEGKDYIVKDGD ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCEEEECCCEEEEECCC IIYFRFNV EEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]