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The map label for this gene is 195952757

Identifier: 195952757

GI number: 195952757

Start: 334476

End: 335048

Strand: Direct

Name: 195952757

Synonym: HY04AAS1_0379

Alternate gene names: NA

Gene position: 334476-335048 (Clockwise)

Preceding gene: 195952756

Following gene: 195952758

Centisome position: 21.45

GC content: 30.54

Gene sequence:

>573_bases
GTGAGAAAATTAACGTTAATTTTTGTTGTTATATCTAGTATTTTGCTATTTTCTTGTGAAAAGCCAGTAAACCCAAGCAT
AAACGCGAAACCTTTTGATTTTAAGCTTTTTTCTGGTAATAAAGAAATATCGTTGAAAGATTATGAAAATCGTTATAAGG
TAATTTTAATTTACTTTGGCTATACCCATTGTCCTGATGTGTGCCCTACGGTGTTGCACAGGCTATCTTCTATGTACAAT
ATGCTTGGTGATGATAAAAAATATGTAAAAGTTGTTTTTATAACTTTAGACCCCAAAAGAGATACTCCAAACATTGCTGA
TGAATATGCTAAGTTCTTTAACAAAAATTTTAGCGGTTTATCCGGAGATCCAGGTTATATAAAAAAAGTAGCCGATAGCT
ATGGTGTGGTTTACAAAATAGTGCCTTCAAAAACACAGGGTTATCTGATAGATCATACTGACAACATATATGTAATTTAT
AATAAAAGCCTAAAAACAATATTCTTTGACAAAGACCAAAACCCAACGTATATGACGTCTTATATAAAAAAACTTTTAAA
AAGTAAAGGCTAA

Upstream 100 bases:

>100_bases
ATCTCACGGCTGCTCCTATTGTAAAAAGGATATTGGAACAAATATATATAAAAGGTATAAATAGAGAAATAAACTAACTT
TATATGCTATAATATTTTTT

Downstream 100 bases:

>100_bases
AATACTTGATTTTTTAACCGATACATTTTATATTACTTTATAGGAGGATTTATATATGAGTTACATGGATATAGCAAACA
TAGCAACTGATATGCAGCAA

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MRKLTLIFVVISSILLFSCEKPVNPSINAKPFDFKLFSGNKEISLKDYENRYKVILIYFGYTHCPDVCPTVLHRLSSMYN
MLGDDKKYVKVVFITLDPKRDTPNIADEYAKFFNKNFSGLSGDPGYIKKVADSYGVVYKIVPSKTQGYLIDHTDNIYVIY
NKSLKTIFFDKDQNPTYMTSYIKKLLKSKG

Sequences:

>Translated_190_residues
MRKLTLIFVVISSILLFSCEKPVNPSINAKPFDFKLFSGNKEISLKDYENRYKVILIYFGYTHCPDVCPTVLHRLSSMYN
MLGDDKKYVKVVFITLDPKRDTPNIADEYAKFFNKNFSGLSGDPGYIKKVADSYGVVYKIVPSKTQGYLIDHTDNIYVIY
NKSLKTIFFDKDQNPTYMTSYIKKLLKSKG
>Mature_190_residues
MRKLTLIFVVISSILLFSCEKPVNPSINAKPFDFKLFSGNKEISLKDYENRYKVILIYFGYTHCPDVCPTVLHRLSSMYN
MLGDDKKYVKVVFITLDPKRDTPNIADEYAKFFNKNFSGLSGDPGYIKKVADSYGVVYKIVPSKTQGYLIDHTDNIYVIY
NKSLKTIFFDKDQNPTYMTSYIKKLLKSKG

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=160, Percent_Identity=28.75, Blast_Score=85, Evalue=4e-17,
Organism=Homo sapiens, GI281182722, Length=160, Percent_Identity=28.75, Blast_Score=85, Evalue=4e-17,
Organism=Homo sapiens, GI281182716, Length=160, Percent_Identity=28.75, Blast_Score=85, Evalue=4e-17,
Organism=Homo sapiens, GI153791313, Length=160, Percent_Identity=28.75, Blast_Score=85, Evalue=4e-17,
Organism=Homo sapiens, GI4759068, Length=132, Percent_Identity=34.0909090909091, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17531419, Length=116, Percent_Identity=31.0344827586207, Blast_Score=71, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6319498, Length=135, Percent_Identity=37.037037037037, Blast_Score=80, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6319511, Length=140, Percent_Identity=33.5714285714286, Blast_Score=72, Evalue=4e-14,
Organism=Drosophila melanogaster, GI19920710, Length=110, Percent_Identity=34.5454545454545, Blast_Score=80, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 21913; Mature: 21913

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLTLIFVVISSILLFSCEKPVNPSINAKPFDFKLFSGNKEISLKDYENRYKVILIYFG
CCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEEEEC
YTHCPDVCPTVLHRLSSMYNMLGDDKKYVKVVFITLDPKRDTPNIADEYAKFFNKNFSGL
CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCC
SGDPGYIKKVADSYGVVYKIVPSKTQGYLIDHTDNIYVIYNKSLKTIFFDKDQNPTYMTS
CCCHHHHHHHHHCCCEEEEEECCCCCCEEEECCCCEEEEECCCEEEEEEECCCCCHHHHH
YIKKLLKSKG
HHHHHHHCCC
>Mature Secondary Structure
MRKLTLIFVVISSILLFSCEKPVNPSINAKPFDFKLFSGNKEISLKDYENRYKVILIYFG
CCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEEEEC
YTHCPDVCPTVLHRLSSMYNMLGDDKKYVKVVFITLDPKRDTPNIADEYAKFFNKNFSGL
CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCC
SGDPGYIKKVADSYGVVYKIVPSKTQGYLIDHTDNIYVIYNKSLKTIFFDKDQNPTYMTS
CCCHHHHHHHHHCCCEEEEEECCCCCCEEEECCCCEEEEECCCEEEEEEECCCCCHHHHH
YIKKLLKSKG
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA