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The map label for this gene is yddU [C]

Identifier: 195952521

GI number: 195952521

Start: 126128

End: 126970

Strand: Direct

Name: yddU [C]

Synonym: HY04AAS1_0141

Alternate gene names: 195952521

Gene position: 126128-126970 (Clockwise)

Preceding gene: 195952520

Following gene: 195952522

Centisome position: 8.09

GC content: 34.16

Gene sequence:

>843_bases
ATGCATTTCATACCTATGCTTGAAGAGTCTGGTCTTATATCAAAATTAGAAACTTGGCTTATAAACCAAGTATGTAAGGA
CTTAGAATATCTATATAGCATAAAGCTTTCTGCAAGTGTACCAATGAACCGTGGTAGACTTGTGCCAATATCTATCAATA
TATCACCTATTTCTTTTAAAAATGAAGATGTATATGAAAAAGTTGTAAGCATTGTTTCAAGATATAAAAATGCAGATAGA
GCGCAATCAGCGCATTTCAACTCTGAGGAACAGACACAGACACCCAAGAGCTCAGAGAACGGCTTAAAGCACACTAGAGC
GGCAAAGACGCATTTCGGGGCTAATGAACAGGACAAGTCTGCCACGGTCTCAAAGGCACTCAATAGCTCTGAGAACGGCT
TACAGCACACTTTATTGGGCTATATAAATATAGAAATTACCGAGAGTTTATTTTTAGAAAATTTTGATAAAGCATTATCT
ACGCTTGAAAAGCTTAAGAGTTCTGGTTTTAAGATATCTATTGATGATTTTGGAACTGGTTATAGTTCTTTTTCCTATCT
TAAAGATTTACCAATAGATTATCTTAAAATAGACATATCTTTTGTAAGGCATATATTGGACGATAAAAAATCAAGATCCA
TCACGAAAACTATAATAGAACTAGCCCACAATCTTGAGATGAAGACCATAGCAGAAGGCGTAGAAACAAAAGAACAATTT
GAGTTGCTAAAGTCTTTAGGATGTGATTTCATTCAAGGTTTTTGGTTAGCAAAACCAATGCCGATAAGTGAGTTAGTAGA
TTTTGTTGAAAGCTGGGAACATAAAAAATTAAATTATTATTGA

Upstream 100 bases:

>100_bases
GTGATATACTATCAGCCTTATTTTGATATCAACACTCTTTGTATTGCTGGATTTGACGCTTACAAGATGGAATTCTGAAG
AACTCGGCTTTATTTCGCCC

Downstream 100 bases:

>100_bases
TAAAGTTTTAGGTTTTTGATATAATATATAAATTTAGAAGGGTCCGTAGCTCAGTTGGATAGAGCAAGGGATTTCTAATC
CCTAGGCCGGGGGTTCGACT

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MHFIPMLEESGLISKLETWLINQVCKDLEYLYSIKLSASVPMNRGRLVPISINISPISFKNEDVYEKVVSIVSRYKNADR
AQSAHFNSEEQTQTPKSSENGLKHTRAAKTHFGANEQDKSATVSKALNSSENGLQHTLLGYINIEITESLFLENFDKALS
TLEKLKSSGFKISIDDFGTGYSSFSYLKDLPIDYLKIDISFVRHILDDKKSRSITKTIIELAHNLEMKTIAEGVETKEQF
ELLKSLGCDFIQGFWLAKPMPISELVDFVESWEHKKLNYY

Sequences:

>Translated_280_residues
MHFIPMLEESGLISKLETWLINQVCKDLEYLYSIKLSASVPMNRGRLVPISINISPISFKNEDVYEKVVSIVSRYKNADR
AQSAHFNSEEQTQTPKSSENGLKHTRAAKTHFGANEQDKSATVSKALNSSENGLQHTLLGYINIEITESLFLENFDKALS
TLEKLKSSGFKISIDDFGTGYSSFSYLKDLPIDYLKIDISFVRHILDDKKSRSITKTIIELAHNLEMKTIAEGVETKEQF
ELLKSLGCDFIQGFWLAKPMPISELVDFVESWEHKKLNYY
>Mature_280_residues
MHFIPMLEESGLISKLETWLINQVCKDLEYLYSIKLSASVPMNRGRLVPISINISPISFKNEDVYEKVVSIVSRYKNADR
AQSAHFNSEEQTQTPKSSENGLKHTRAAKTHFGANEQDKSATVSKALNSSENGLQHTLLGYINIEITESLFLENFDKALS
TLEKLKSSGFKISIDDFGTGYSSFSYLKDLPIDYLKIDISFVRHILDDKKSRSITKTIIELAHNLEMKTIAEGVETKEQF
ELLKSLGCDFIQGFWLAKPMPISELVDFVESWEHKKLNYY

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=227, Percent_Identity=31.7180616740088, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1790496, Length=137, Percent_Identity=43.0656934306569, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1787541, Length=120, Percent_Identity=43.3333333333333, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1788502, Length=129, Percent_Identity=39.5348837209302, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788849, Length=126, Percent_Identity=42.0634920634921, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI87081845, Length=128, Percent_Identity=42.96875, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI226510982, Length=126, Percent_Identity=39.6825396825397, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI87081743, Length=129, Percent_Identity=40.3100775193798, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87082096, Length=121, Percent_Identity=38.0165289256198, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI87081980, Length=121, Percent_Identity=42.1487603305785, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786507, Length=132, Percent_Identity=35.6060606060606, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787055, Length=133, Percent_Identity=36.0902255639098, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787410, Length=117, Percent_Identity=30.7692307692308, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 31875; Mature: 31875

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHFIPMLEESGLISKLETWLINQVCKDLEYLYSIKLSASVPMNRGRLVPISINISPISFK
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEEEECCCCCC
NEDVYEKVVSIVSRYKNADRAQSAHFNSEEQTQTPKSSENGLKHTRAAKTHFGANEQDKS
CHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHH
ATVSKALNSSENGLQHTLLGYINIEITESLFLENFDKALSTLEKLKSSGFKISIDDFGTG
HHHHHHHCCCCCCHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC
YSSFSYLKDLPIDYLKIDISFVRHILDDKKSRSITKTIIELAHNLEMKTIAEGVETKEQF
HHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHH
ELLKSLGCDFIQGFWLAKPMPISELVDFVESWEHKKLNYY
HHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MHFIPMLEESGLISKLETWLINQVCKDLEYLYSIKLSASVPMNRGRLVPISINISPISFK
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEEEECCCCCC
NEDVYEKVVSIVSRYKNADRAQSAHFNSEEQTQTPKSSENGLKHTRAAKTHFGANEQDKS
CHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHH
ATVSKALNSSENGLQHTLLGYINIEITESLFLENFDKALSTLEKLKSSGFKISIDDFGTG
HHHHHHHCCCCCCHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC
YSSFSYLKDLPIDYLKIDISFVRHILDDKKSRSITKTIIELAHNLEMKTIAEGVETKEQF
HHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHH
ELLKSLGCDFIQGFWLAKPMPISELVDFVESWEHKKLNYY
HHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]