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The map label for this gene is yciR [C]

Identifier: 195952520

GI number: 195952520

Start: 125515

End: 126105

Strand: Direct

Name: yciR [C]

Synonym: HY04AAS1_0140

Alternate gene names: 195952520

Gene position: 125515-126105 (Clockwise)

Preceding gene: 195952519

Following gene: 195952521

Centisome position: 8.05

GC content: 34.69

Gene sequence:

>591_bases
ATGAATGCTATAAACACTGGTAAAGCTAATTACAATAGGCTTGGGGCTTTCATACTGGCGGATATCTATAGATTTACTTA
TATAAACGACGTATATGGTTTTGATATAGGCGATGAGCTTTTGAAAGCTGTGGGCAGGAGGCTAAGAGATATATTTAGGC
CAACAGATATAATAGGTAGGGTTAGTTCTGATACGTTCGGTATAATTTTGACAGATTTAAAGGACAAGGAAGATGTAATA
ATACTTTTGGATAGATTAAGAAAAGCTTTTGAGCAACCTTTCAACATAAATGGCAATGTCATAAGTGTAGCTATGCAAAT
GGGTATAGCTATTTTCCCAGACAATGGAAAGTCTGCCAAAGAGGTGTATAAAAATGCTGACATATCTTTGGCTAAAGCTA
AAAAAAATACAGAGTGGAGTTATGTGTTTTTCAGCGATGATTTAAACTCAAAGGCTTCCCAGTTTTTACTTTACAAAACA
CATCTTGAGAAAGCTTTTGAGAAAGAAGAGTTTGTGATATACTATCAGCCTTATTTTGATATCAACACTCTTTGTATTGC
TGGATTTGACGCTTACAAGATGGAATTCTGA

Upstream 100 bases:

>100_bases
TCTCTTACTCATTTTTGATAGCAGAACTTGATATGCATGTAAGAAGAGCATTGGAAACGAGCGAATGGGGGGGGGTGAGC
CGTCTGCCGTGGTTCCCGAG

Downstream 100 bases:

>100_bases
AGAACTCGGCTTTATTTCGCCCATGCATTTCATACCTATGCTTGAAGAGTCTGGTCTTATATCAAAATTAGAAACTTGGC
TTATAAACCAAGTATGTAAG

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MNAINTGKANYNRLGAFILADIYRFTYINDVYGFDIGDELLKAVGRRLRDIFRPTDIIGRVSSDTFGIILTDLKDKEDVI
ILLDRLRKAFEQPFNINGNVISVAMQMGIAIFPDNGKSAKEVYKNADISLAKAKKNTEWSYVFFSDDLNSKASQFLLYKT
HLEKAFEKEEFVIYYQPYFDINTLCIAGFDAYKMEF

Sequences:

>Translated_196_residues
MNAINTGKANYNRLGAFILADIYRFTYINDVYGFDIGDELLKAVGRRLRDIFRPTDIIGRVSSDTFGIILTDLKDKEDVI
ILLDRLRKAFEQPFNINGNVISVAMQMGIAIFPDNGKSAKEVYKNADISLAKAKKNTEWSYVFFSDDLNSKASQFLLYKT
HLEKAFEKEEFVIYYQPYFDINTLCIAGFDAYKMEF
>Mature_196_residues
MNAINTGKANYNRLGAFILADIYRFTYINDVYGFDIGDELLKAVGRRLRDIFRPTDIIGRVSSDTFGIILTDLKDKEDVI
ILLDRLRKAFEQPFNINGNVISVAMQMGIAIFPDNGKSAKEVYKNADISLAKAKKNTEWSYVFFSDDLNSKASQFLLYKT
HLEKAFEKEEFVIYYQPYFDINTLCIAGFDAYKMEF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=176, Percent_Identity=27.2727272727273, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1786584, Length=125, Percent_Identity=31.2, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1787262, Length=124, Percent_Identity=29.8387096774194, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1788381, Length=119, Percent_Identity=29.4117647058824, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 22531; Mature: 22531

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAINTGKANYNRLGAFILADIYRFTYINDVYGFDIGDELLKAVGRRLRDIFRPTDIIGR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHC
VSSDTFGIILTDLKDKEDVIILLDRLRKAFEQPFNINGNVISVAMQMGIAIFPDNGKSAK
CCCCCEEEEEECCCCCCCEEHHHHHHHHHHCCCCCCCCHHHEEEECCCEEEECCCCCHHH
EVYKNADISLAKAKKNTEWSYVFFSDDLNSKASQFLLYKTHLEKAFEKEEFVIYYQPYFD
HHHHCCCCEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
INTLCIAGFDAYKMEF
CCEEEEECCCCEEECC
>Mature Secondary Structure
MNAINTGKANYNRLGAFILADIYRFTYINDVYGFDIGDELLKAVGRRLRDIFRPTDIIGR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHC
VSSDTFGIILTDLKDKEDVIILLDRLRKAFEQPFNINGNVISVAMQMGIAIFPDNGKSAK
CCCCCEEEEEECCCCCCCEEHHHHHHHHHHCCCCCCCCHHHEEEECCCEEEECCCCCHHH
EVYKNADISLAKAKKNTEWSYVFFSDDLNSKASQFLLYKTHLEKAFEKEEFVIYYQPYFD
HHHHCCCCEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
INTLCIAGFDAYKMEF
CCEEEEECCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]