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The map label for this gene is hup1 [H]

Identifier: 195952487

GI number: 195952487

Start: 100181

End: 100489

Strand: Direct

Name: hup1 [H]

Synonym: HY04AAS1_0107

Alternate gene names: 195952487

Gene position: 100181-100489 (Clockwise)

Preceding gene: 195952486

Following gene: 195952488

Centisome position: 6.42

GC content: 29.77

Gene sequence:

>309_bases
ATGAGAAAGAAAGATTTGTTGGATCAAGTTATGATAAAGTTGCAAAAACAAAATACTAAACTAAAGAAAAGAGATGTATC
TCGTATAATAAATATGTTTTTAAATGCGTTAGAAGATGCTATCATATCAAAAAAGGAAAATAAAATTCAGCTTTCTGGTT
TTGGTACTTTTTATATAAAAGAAAGAAAACCCCGTATAGGAAGAAATCCAAAGACTGGTGATTTGTATAAGATTCCCCCA
AGATACAACCTCACGTTCAAACCAAGCCAAAATTTTGTGTTGCAAGTAAACCACAAGAAAAAAGTCTAA

Upstream 100 bases:

>100_bases
GTACTTTGATATTTTCTCTTAGCATATCAAAAGCCATAAACCTTAGAATTGGTATCATATTTATAATTTTCATAATTGTG
TTATACTTTTTATATATATT

Downstream 100 bases:

>100_bases
CGGAATGTGGCGCAGGTGGTAGCGCACTGGCATGGGGGGCCAGGGGTCCCGGGTTCGAGTCCCGGCATTCCGATTTTAAT
TTTTTATTTTTTTTACGATA

Product: histone family protein DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 102

Protein sequence:

>102_residues
MRKKDLLDQVMIKLQKQNTKLKKRDVSRIINMFLNALEDAIISKKENKIQLSGFGTFYIKERKPRIGRNPKTGDLYKIPP
RYNLTFKPSQNFVLQVNHKKKV

Sequences:

>Translated_102_residues
MRKKDLLDQVMIKLQKQNTKLKKRDVSRIINMFLNALEDAIISKKENKIQLSGFGTFYIKERKPRIGRNPKTGDLYKIPP
RYNLTFKPSQNFVLQVNHKKKV
>Mature_102_residues
MRKKDLLDQVMIKLQKQNTKLKKRDVSRIINMFLNALEDAIISKKENKIQLSGFGTFYIKERKPRIGRNPKTGDLYKIPP
RYNLTFKPSQNFVLQVNHKKKV

Specific function: Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 12074; Mature: 12074

Theoretical pI: Translated: 11.20; Mature: 11.20

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKKDLLDQVMIKLQKQNTKLKKRDVSRIINMFLNALEDAIISKKENKIQLSGFGTFYIK
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEE
ERKPRIGRNPKTGDLYKIPPRYNLTFKPSQNFVLQVNHKKKV
CCCCCCCCCCCCCCEEECCCCCCEEECCCCCEEEEECCCCCC
>Mature Secondary Structure
MRKKDLLDQVMIKLQKQNTKLKKRDVSRIINMFLNALEDAIISKKENKIQLSGFGTFYIK
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEE
ERKPRIGRNPKTGDLYKIPPRYNLTFKPSQNFVLQVNHKKKV
CCCCCCCCCCCCCCEEECCCCCCEEECCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]