Click here to switch to the map view.

The map label for this gene is 195952476

Identifier: 195952476

GI number: 195952476

Start: 89036

End: 90628

Strand: Direct

Name: 195952476

Synonym: HY04AAS1_0096

Alternate gene names: NA

Gene position: 89036-90628 (Clockwise)

Preceding gene: 195952475

Following gene: 195952477

Centisome position: 5.71

GC content: 29.88

Gene sequence:

>1593_bases
ATGAAAAAGAATAACAAACAATCTCTAGTTCAAAATACCGAGTTAAGAACCTTTTCTATAAGAATAAAGTCTGACAAGTT
AGAAAAGAAACTAAAAAATATCTTATTTACTTATAAACACTTTGAAAACATATTGCTAATACTTATAAACCAAAACTACA
ATCTATATAAAGATGGTAAAGATACAAATGATTTTAACTTACTTACTTCTCCACAGCTTATGAGAAACGCTTTGTATGAT
TACAACTCTAAACATTCAGCTCAGATAGAGTATCTCAAGAACAAATATAAGGACAATCAACTTTGGAATGAATTAAAAGA
AACTGCTAAGAAATTGAAATCACATAACTTAACTCATATCATCAAGAGAGTAAAAGCAAGTTTTAATACCTACTTTACTA
GTTTAGAGTTATATAAACAAAATCCAAGTTTATTTCAAGGAATGCCTAAGCCTCCTAAACCAAAAAAGCTTTCTAAACTA
ACAAACTATGCAGTAGAATTAGATAAATACTGTTCTTTATCTTTTGCACGATTAGAGAAGGAAAATTTAGTAGGTATTAA
TTTGTCTGACCGCATGGTTTATATACATGTGGATAAAGAGCAGGTTAAAAAGCTAACAGACATAAACAAGTTATACTCAG
CAAGAGTTGTGTATGATAATGGAGATTTGTATTTGCAAATTAGTTATTTGAAAGAATTAAATAAAACAGAAAAGGATAAA
ATCAAATATGCAGGCATAGATATAGGCATAAATAATCTGATAACAGTGTTTATAGACGACAAAAGTACTCCATCACTAAT
AGTGGATGGCAAGCCCTTTAAACATTACAATGCAAAGTTTAATAGACTTGTAGCTAAGCTTAATGAATCAAAATCTAAAG
AGGTATTAGAATGGGGTGTATCAAAAACAGGGACAAAATATCCTGTTAAATATACAGAGAAAGGTAAGAGAATTGGTAAA
TTTATTTCGTTCTTATACTCAAAAAGAAATAGGTTTTTTACAGATCAATTTCATAAAATGGCTAAACGTGTAGTTGAGTA
TTTACATCTACATGGAGTATCAGAACTTTTTATATCCAAAAACTTAGCACAGCTAAAGAGCAATGGAGAATGTGAACTAA
GCAAAGCTGTAAAACAAAACTTCATTCAAATACCATTTGTGAAACTTTTAAAATACATAGAGTACAAAGCACAAGAATAT
GGAATAAAAGTAAGTTATATAGATGAAAAATACACATCTAAAGCAAGCTGTATAAGTGATGATGTAGAAAGTATTCAAGA
TAATCCTGACTTGACTAATGCTTTCAAAGGAAAGCGTGTTAAGAGGGGTTTATTCTTGGATACTGTTATAAACAAAGTAT
TCAATGCTGATATTAACGCTGCAGTAAACCATATCAAAATAGGTACTGGTAAATGTTTTGTTTGGTTAAAAGACAAACTA
TTTAAGCTCTGTAATCCCATTAAAATCAAAAGCGACTACGAATTCTGTAGACTGCTAAAAAGTCTATGGAATAGTGTGGG
GAATAAGTCCGTGTCATTTGGCACAGAGGCGTTGCAATCTAACAGATTGGTAAAAAATTTCAGTTTTTGTTAG

Upstream 100 bases:

>100_bases
GCTTGAAAAAATTAGAATTTATACTATATTTAAAGTATGTATAAGATAAGAAAATTTTCTAAGCTTACAGGTATATATAT
AACTACATTGAGAAAGTGGG

Downstream 100 bases:

>100_bases
GTGTAAGTCGACGGATGTGATAAAATATAATTATGATAGGCACCCCATTGTCTTACAACACTACAAAAATATTGCTTCTT
GGTTCAGGTGAACTTGGTAA

Product: transposase, IS605 OrfB family

Products: NA

Alternate protein names: Transposase ORF_B; Transposase Family; ISSoc6 OrfB Transposase; Transposase ISC; Transposase Family Protein; Transposase OrfB; Neutral Protease; Transposase IS; Transposase Orf_b; IS Element ISTsi2 OrfB Probably Transposase

Number of amino acids: Translated: 530; Mature: 530

Protein sequence:

>530_residues
MKKNNKQSLVQNTELRTFSIRIKSDKLEKKLKNILFTYKHFENILLILINQNYNLYKDGKDTNDFNLLTSPQLMRNALYD
YNSKHSAQIEYLKNKYKDNQLWNELKETAKKLKSHNLTHIIKRVKASFNTYFTSLELYKQNPSLFQGMPKPPKPKKLSKL
TNYAVELDKYCSLSFARLEKENLVGINLSDRMVYIHVDKEQVKKLTDINKLYSARVVYDNGDLYLQISYLKELNKTEKDK
IKYAGIDIGINNLITVFIDDKSTPSLIVDGKPFKHYNAKFNRLVAKLNESKSKEVLEWGVSKTGTKYPVKYTEKGKRIGK
FISFLYSKRNRFFTDQFHKMAKRVVEYLHLHGVSELFISKNLAQLKSNGECELSKAVKQNFIQIPFVKLLKYIEYKAQEY
GIKVSYIDEKYTSKASCISDDVESIQDNPDLTNAFKGKRVKRGLFLDTVINKVFNADINAAVNHIKIGTGKCFVWLKDKL
FKLCNPIKIKSDYEFCRLLKSLWNSVGNKSVSFGTEALQSNRLVKNFSFC

Sequences:

>Translated_530_residues
MKKNNKQSLVQNTELRTFSIRIKSDKLEKKLKNILFTYKHFENILLILINQNYNLYKDGKDTNDFNLLTSPQLMRNALYD
YNSKHSAQIEYLKNKYKDNQLWNELKETAKKLKSHNLTHIIKRVKASFNTYFTSLELYKQNPSLFQGMPKPPKPKKLSKL
TNYAVELDKYCSLSFARLEKENLVGINLSDRMVYIHVDKEQVKKLTDINKLYSARVVYDNGDLYLQISYLKELNKTEKDK
IKYAGIDIGINNLITVFIDDKSTPSLIVDGKPFKHYNAKFNRLVAKLNESKSKEVLEWGVSKTGTKYPVKYTEKGKRIGK
FISFLYSKRNRFFTDQFHKMAKRVVEYLHLHGVSELFISKNLAQLKSNGECELSKAVKQNFIQIPFVKLLKYIEYKAQEY
GIKVSYIDEKYTSKASCISDDVESIQDNPDLTNAFKGKRVKRGLFLDTVINKVFNADINAAVNHIKIGTGKCFVWLKDKL
FKLCNPIKIKSDYEFCRLLKSLWNSVGNKSVSFGTEALQSNRLVKNFSFC
>Mature_530_residues
MKKNNKQSLVQNTELRTFSIRIKSDKLEKKLKNILFTYKHFENILLILINQNYNLYKDGKDTNDFNLLTSPQLMRNALYD
YNSKHSAQIEYLKNKYKDNQLWNELKETAKKLKSHNLTHIIKRVKASFNTYFTSLELYKQNPSLFQGMPKPPKPKKLSKL
TNYAVELDKYCSLSFARLEKENLVGINLSDRMVYIHVDKEQVKKLTDINKLYSARVVYDNGDLYLQISYLKELNKTEKDK
IKYAGIDIGINNLITVFIDDKSTPSLIVDGKPFKHYNAKFNRLVAKLNESKSKEVLEWGVSKTGTKYPVKYTEKGKRIGK
FISFLYSKRNRFFTDQFHKMAKRVVEYLHLHGVSELFISKNLAQLKSNGECELSKAVKQNFIQIPFVKLLKYIEYKAQEY
GIKVSYIDEKYTSKASCISDDVESIQDNPDLTNAFKGKRVKRGLFLDTVINKVFNADINAAVNHIKIGTGKCFVWLKDKL
FKLCNPIKIKSDYEFCRLLKSLWNSVGNKSVSFGTEALQSNRLVKNFSFC

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 61665; Mature: 61665

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNNKQSLVQNTELRTFSIRIKSDKLEKKLKNILFTYKHFENILLILINQNYNLYKDGK
CCCCCHHHHHHCCCEEEEEEEECHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEECCC
DTNDFNLLTSPQLMRNALYDYNSKHSAQIEYLKNKYKDNQLWNELKETAKKLKSHNLTHI
CCCCCEECCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHH
IKRVKASFNTYFTSLELYKQNPSLFQGMPKPPKPKKLSKLTNYAVELDKYCSLSFARLEK
HHHHHHHHHHHHHHHEEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHCC
ENLVGINLSDRMVYIHVDKEQVKKLTDINKLYSARVVYDNGDLYLQISYLKELNKTEKDK
CCEEEEEECCCEEEEEECHHHHHHHHHHHHHHEEEEEEECCCEEEEEHHHHHCCCCHHHC
IKYAGIDIGINNLITVFIDDKSTPSLIVDGKPFKHYNAKFNRLVAKLNESKSKEVLEWGV
EEEEEEEEECCCEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCC
SKTGTKYPVKYTEKGKRIGKFISFLYSKRNRFFTDQFHKMAKRVVEYLHLHGVSELFISK
CCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
NLAQLKSNGECELSKAVKQNFIQIPFVKLLKYIEYKAQEYGIKVSYIDEKYTSKASCISD
HHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCEEEEEECHHHCCHHHHHHH
DVESIQDNPDLTNAFKGKRVKRGLFLDTVINKVFNADINAAVNHIKIGTGKCFVWLKDKL
HHHHHCCCCCHHHHHCCCHHHCCHHHHHHHHHHHCCCHHHHHCEEEECCCEEEEEEHHHH
FKLCNPIKIKSDYEFCRLLKSLWNSVGNKSVSFGTEALQSNRLVKNFSFC
HHHCCCCEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHCCCCC
>Mature Secondary Structure
MKKNNKQSLVQNTELRTFSIRIKSDKLEKKLKNILFTYKHFENILLILINQNYNLYKDGK
CCCCCHHHHHHCCCEEEEEEEECHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEECCC
DTNDFNLLTSPQLMRNALYDYNSKHSAQIEYLKNKYKDNQLWNELKETAKKLKSHNLTHI
CCCCCEECCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHH
IKRVKASFNTYFTSLELYKQNPSLFQGMPKPPKPKKLSKLTNYAVELDKYCSLSFARLEK
HHHHHHHHHHHHHHHEEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHCC
ENLVGINLSDRMVYIHVDKEQVKKLTDINKLYSARVVYDNGDLYLQISYLKELNKTEKDK
CCEEEEEECCCEEEEEECHHHHHHHHHHHHHHEEEEEEECCCEEEEEHHHHHCCCCHHHC
IKYAGIDIGINNLITVFIDDKSTPSLIVDGKPFKHYNAKFNRLVAKLNESKSKEVLEWGV
EEEEEEEEECCCEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCC
SKTGTKYPVKYTEKGKRIGKFISFLYSKRNRFFTDQFHKMAKRVVEYLHLHGVSELFISK
CCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
NLAQLKSNGECELSKAVKQNFIQIPFVKLLKYIEYKAQEYGIKVSYIDEKYTSKASCISD
HHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCEEEEEECHHHCCHHHHHHH
DVESIQDNPDLTNAFKGKRVKRGLFLDTVINKVFNADINAAVNHIKIGTGKCFVWLKDKL
HHHHHCCCCCHHHHHCCCHHHCCHHHHHHHHHHHCCCHHHHHCEEEECCCEEEEEEHHHH
FKLCNPIKIKSDYEFCRLLKSLWNSVGNKSVSFGTEALQSNRLVKNFSFC
HHHCCCCEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA