| Definition | Hydrogenobaculum sp. Y04AAS1 chromosome, complete genome. |
|---|---|
| Accession | NC_011126 |
| Length | 1,559,514 |
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The map label for this gene is purH [H]
Identifier: 195952470
GI number: 195952470
Start: 84037
End: 85557
Strand: Direct
Name: purH [H]
Synonym: HY04AAS1_0090
Alternate gene names: 195952470
Gene position: 84037-85557 (Clockwise)
Preceding gene: 195952469
Following gene: 195952471
Centisome position: 5.39
GC content: 36.62
Gene sequence:
>1521_bases ATGAGAGCACTTATATCTGTATACGATAAAACCGGTATTTTAGAACTGGCTAAGGAGCTTTTGAACCAAGGGTATGAGAT TCTATCCAGTGGTGGGACATACACTTATCTAAAAAATGCTGGTGTTGATGCCATAGAGGTATCTGAGGTAACAGGTTTTA GAGAGATTTTAGGTGGTAGAGTTAAGACGCTTCATCCCGCTATACACGGTGGTATTTTGTTTAGAGAAGACGTAGAAAAA GATTTAGAAGAAATAAAAGAAAACTCTATAGAACCTATTGATATCGTAGTGGTGAACTTGTATCCTTTTGAAAAGAAGAT GAAAGAGCTAAAAGATATAGATGCTCTTGTGGAGTTTATAGACATAGGGGGTCCTACTCTTGTAAGAGCCGCTGCTAAAA ATCACAAACGAGTTAGTGTACTTACAGATATCGAAGATTACGGATGGTTTATAGAAAAGCTCAAAATGAATGCTGTATCT CAGCAAGACAGAAAATACTTAGCTTTGAAAGCTTTTTGGTTAACATCTTACTATGATGCTGTTATAGCTAGTTATTTTTC CAAAGTATTTGGCTTTTCAGAAAAAGATTTTAAGCATCATACTGTACCTATGTTTTTGAGAGATGAATTGAGATACGGTG AAAATCCACATCAGCAAGCTTACCTATATGAAAATCCGTTGGAAGAAAATGGTATTGTAAGAGCTGATGTGCTTCAAGGT AAAAAGATGTCTTACAACAACTATCTTGATGCCGATTCTGTTGTAAAGCTCATGTCAGAGTTTTCTAATCCTTGCTGTGC TATCGTAAAACACAACAATCCAAGCGGTATAACCACAGACAACAATATTCTGGAAGCTTACAAAAAAGCTTTTCAATGTG ATCCTGAGGCGGCGTTTGGTGGTATCGTAGCTTTTAACAAGGTTGTAGATAAAGACGTTGCTAAGGCTATTACAGAGCAT TTTTATGAGATAGTTATAGCTCCTGAGTTTACCGAAGAAGCTGTTGAAGAGTTTTCCAAAAAGAAGAATTTAAGGTTAGT AAGGTATAAAAACTACAATCAGAATATTGATCTAAGGAGTATATCTGGCGGGTTTTTAGTGCAGGACATAGATGATAAGC TTTATGAGTCTATAGAGATAGTTTCATTGAGAAGACCTACTGAGCAAGAGTTAGAGGATGCTATATTTGCTTGGAAAGTG GCAAAATGGACAAAATCAAATGCTATAGTGATAGCTAAAAACAATCAAACCATAGGTATAGGCGCTGGTCAGGTGTCGAG GGTAGATTCTCTTAGAAGCGCTATAAGAAAAGCAAAAAACTTTTCCCATGATTTAAAAGGCGCCGTAGTGGCCTCAGACG CTTTTTTCCCGTTTAGAGATAGCATAGATATAGCTGCTGAAGAAGGAATATCTGGTACAATACAACCTGGTGGTTCTATA AGAGACAAAGAAGTTATAGAGGCTGTAAATGAGCATAACATGTTTATGATATTTACCCATATGAGGCATTTCAGACATTG A
Upstream 100 bases:
>100_bases TAAATTACCAAAGACAAGAAGTGGAAAGATTATGAGAAGAGTACTAAAAGCCAAAGAGCTTGGGCTTGATATAGGCGATG TATCTACCTTAGAGGATTAA
Downstream 100 bases:
>100_bases AGCTTTGCAAATTTGAGAATTGTTTTTATATTTTATGTATATCCAATAGTGAGAGGTTTTTATGAAATTACCACCACTTA GAATAAGGCATATAGAGGTG
Product: bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
Products: NA
Alternate protein names: Phosphoribosylaminoimidazolecarboxamide formyltransferase; AICAR transformylase; IMP cyclohydrolase; ATIC; IMP synthase; Inosinicase [H]
Number of amino acids: Translated: 506; Mature: 506
Protein sequence:
>506_residues MRALISVYDKTGILELAKELLNQGYEILSSGGTYTYLKNAGVDAIEVSEVTGFREILGGRVKTLHPAIHGGILFREDVEK DLEEIKENSIEPIDIVVVNLYPFEKKMKELKDIDALVEFIDIGGPTLVRAAAKNHKRVSVLTDIEDYGWFIEKLKMNAVS QQDRKYLALKAFWLTSYYDAVIASYFSKVFGFSEKDFKHHTVPMFLRDELRYGENPHQQAYLYENPLEENGIVRADVLQG KKMSYNNYLDADSVVKLMSEFSNPCCAIVKHNNPSGITTDNNILEAYKKAFQCDPEAAFGGIVAFNKVVDKDVAKAITEH FYEIVIAPEFTEEAVEEFSKKKNLRLVRYKNYNQNIDLRSISGGFLVQDIDDKLYESIEIVSLRRPTEQELEDAIFAWKV AKWTKSNAIVIAKNNQTIGIGAGQVSRVDSLRSAIRKAKNFSHDLKGAVVASDAFFPFRDSIDIAAEEGISGTIQPGGSI RDKEVIEAVNEHNMFMIFTHMRHFRH
Sequences:
>Translated_506_residues MRALISVYDKTGILELAKELLNQGYEILSSGGTYTYLKNAGVDAIEVSEVTGFREILGGRVKTLHPAIHGGILFREDVEK DLEEIKENSIEPIDIVVVNLYPFEKKMKELKDIDALVEFIDIGGPTLVRAAAKNHKRVSVLTDIEDYGWFIEKLKMNAVS QQDRKYLALKAFWLTSYYDAVIASYFSKVFGFSEKDFKHHTVPMFLRDELRYGENPHQQAYLYENPLEENGIVRADVLQG KKMSYNNYLDADSVVKLMSEFSNPCCAIVKHNNPSGITTDNNILEAYKKAFQCDPEAAFGGIVAFNKVVDKDVAKAITEH FYEIVIAPEFTEEAVEEFSKKKNLRLVRYKNYNQNIDLRSISGGFLVQDIDDKLYESIEIVSLRRPTEQELEDAIFAWKV AKWTKSNAIVIAKNNQTIGIGAGQVSRVDSLRSAIRKAKNFSHDLKGAVVASDAFFPFRDSIDIAAEEGISGTIQPGGSI RDKEVIEAVNEHNMFMIFTHMRHFRH >Mature_506_residues MRALISVYDKTGILELAKELLNQGYEILSSGGTYTYLKNAGVDAIEVSEVTGFREILGGRVKTLHPAIHGGILFREDVEK DLEEIKENSIEPIDIVVVNLYPFEKKMKELKDIDALVEFIDIGGPTLVRAAAKNHKRVSVLTDIEDYGWFIEKLKMNAVS QQDRKYLALKAFWLTSYYDAVIASYFSKVFGFSEKDFKHHTVPMFLRDELRYGENPHQQAYLYENPLEENGIVRADVLQG KKMSYNNYLDADSVVKLMSEFSNPCCAIVKHNNPSGITTDNNILEAYKKAFQCDPEAAFGGIVAFNKVVDKDVAKAITEH FYEIVIAPEFTEEAVEEFSKKKNLRLVRYKNYNQNIDLRSISGGFLVQDIDDKLYESIEIVSLRRPTEQELEDAIFAWKV AKWTKSNAIVIAKNNQTIGIGAGQVSRVDSLRSAIRKAKNFSHDLKGAVVASDAFFPFRDSIDIAAEEGISGTIQPGGSI RDKEVIEAVNEHNMFMIFTHMRHFRH
Specific function: De novo purine biosynthesis; ninth step. De novo purine biosynthesis; tenth step. [C]
COG id: COG0138
COG function: function code F; AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the purH family [H]
Homologues:
Organism=Homo sapiens, GI20127454, Length=481, Percent_Identity=36.7983367983368, Blast_Score=237, Evalue=2e-62, Organism=Escherichia coli, GI1790439, Length=523, Percent_Identity=47.6099426386233, Blast_Score=467, Evalue=1e-133, Organism=Caenorhabditis elegans, GI71985564, Length=485, Percent_Identity=35.8762886597938, Blast_Score=238, Evalue=8e-63, Organism=Caenorhabditis elegans, GI71985574, Length=316, Percent_Identity=28.4810126582279, Blast_Score=78, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71985556, Length=60, Percent_Identity=48.3333333333333, Blast_Score=70, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6323768, Length=475, Percent_Identity=38.3157894736842, Blast_Score=259, Evalue=1e-69, Organism=Saccharomyces cerevisiae, GI6323056, Length=475, Percent_Identity=38.1052631578947, Blast_Score=253, Evalue=5e-68, Organism=Drosophila melanogaster, GI24649832, Length=474, Percent_Identity=35.6540084388186, Blast_Score=242, Evalue=4e-64,
Paralogues:
None
Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 640 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002695 - InterPro: IPR013982 - InterPro: IPR016193 - InterPro: IPR011607 [H]
Pfam domain/function: PF01808 AICARFT_IMPCHas; PF02142 MGS [H]
EC number: =2.1.2.3; =3.5.4.10 [H]
Molecular weight: Translated: 57283; Mature: 57283
Theoretical pI: Translated: 5.81; Mature: 5.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRALISVYDKTGILELAKELLNQGYEILSSGGTYTYLKNAGVDAIEVSEVTGFREILGGR CCCHHHHHCCCCHHHHHHHHHHCCHHHHHCCCCEEEEECCCCCEEEHHHHHHHHHHHCCC VKTLHPAIHGGILFREDVEKDLEEIKENSIEPIDIVVVNLYPFEKKMKELKDIDALVEFI HHEECHHHHCCEEEHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHH DIGGPTLVRAAAKNHKRVSVLTDIEDYGWFIEKLKMNAVSQQDRKYLALKAFWLTSYYDA HCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VIASYFSKVFGFSEKDFKHHTVPMFLRDELRYGENPHQQAYLYENPLEENGIVRADVLQG HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEEHHCC KKMSYNNYLDADSVVKLMSEFSNPCCAIVKHNNPSGITTDNNILEAYKKAFQCDPEAAFG CCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHH GIVAFNKVVDKDVAKAITEHFYEIVIAPEFTEEAVEEFSKKKNLRLVRYKNYNQNIDLRS HHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCEEE ISGGFLVQDIDDKLYESIEIVSLRRPTEQELEDAIFAWKVAKWTKSNAIVIAKNNQTIGI CCCCEEEEHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEE GAGQVSRVDSLRSAIRKAKNFSHDLKGAVVASDAFFPFRDSIDIAAEEGISGTIQPGGSI CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCC RDKEVIEAVNEHNMFMIFTHMRHFRH CHHHHHHHHCCCCEEEEEEHHHHHCC >Mature Secondary Structure MRALISVYDKTGILELAKELLNQGYEILSSGGTYTYLKNAGVDAIEVSEVTGFREILGGR CCCHHHHHCCCCHHHHHHHHHHCCHHHHHCCCCEEEEECCCCCEEEHHHHHHHHHHHCCC VKTLHPAIHGGILFREDVEKDLEEIKENSIEPIDIVVVNLYPFEKKMKELKDIDALVEFI HHEECHHHHCCEEEHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHH DIGGPTLVRAAAKNHKRVSVLTDIEDYGWFIEKLKMNAVSQQDRKYLALKAFWLTSYYDA HCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VIASYFSKVFGFSEKDFKHHTVPMFLRDELRYGENPHQQAYLYENPLEENGIVRADVLQG HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEEHHCC KKMSYNNYLDADSVVKLMSEFSNPCCAIVKHNNPSGITTDNNILEAYKKAFQCDPEAAFG CCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHH GIVAFNKVVDKDVAKAITEHFYEIVIAPEFTEEAVEEFSKKKNLRLVRYKNYNQNIDLRS HHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCEEE ISGGFLVQDIDDKLYESIEIVSLRRPTEQELEDAIFAWKVAKWTKSNAIVIAKNNQTIGI CCCCEEEEHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEE GAGQVSRVDSLRSAIRKAKNFSHDLKGAVVASDAFFPFRDSIDIAAEEGISGTIQPGGSI CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCC RDKEVIEAVNEHNMFMIFTHMRHFRH CHHHHHHHHCCCCEEEEEEHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]