| Definition | Hydrogenobaculum sp. Y04AAS1 chromosome, complete genome. |
|---|---|
| Accession | NC_011126 |
| Length | 1,559,514 |
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The map label for this gene is yhgH [C]
Identifier: 195952468
GI number: 195952468
Start: 81425
End: 82123
Strand: Direct
Name: yhgH [C]
Synonym: HY04AAS1_0088
Alternate gene names: 195952468
Gene position: 81425-82123 (Clockwise)
Preceding gene: 195952467
Following gene: 195952469
Centisome position: 5.22
GC content: 30.76
Gene sequence:
>699_bases ATGTACTTATCAAAATACCTACGGATAAAGAGCCAAATAGCTAAGATTTTTGACAAACTTTACATACCAGACAACGTTTG TCTTAGTTGTAACAACTATTTTAAGCCGACGCTTCAGGGTTATGTTTGCGATGATTGTATAGCATCTATAAAACCTATGC TTTTTGAAAAAGAAACTCTTCCTTACATAGATTCCTATAGGATTTTTAGTAGCTACGATAAAGCTTTAAAAGAAATGATA ATCGCCTTAAAATTTAAGAAAGCCTCTTTGTTTGCAAAAATAATAGGTGATATTGTGAAAGATGATTTTTTTGCTTTTGT AAAATCTATAAACCCTGATATTGTTACCTATGTGCCAGTTTCTTTCTTTAGATTTTGGCAAAGGGGCTATGACCAGAACG ATATCTTATTAAAAGCTTTAAACGCTCAATACATATCTATTTTGAAACGTAGAAGACATGCTAAACCTCTATCTCTTAGC ATGGATAAAAATCAAAGAGAACACATTGTTTCTAAGGCTTTTAAGATAAGAAAAGAATTTGTATTTAATTTAGAAGGTAA AAAAGTTTTAGTCTTTGATGATATATTAACTACAGGAGCTACTGCTACTCAAATAGCGAGAACCCTTAAGATGCACGCTG TAAAAGAAGTTTATTTTTATTTTATAGCGTCCCATAAAAGAGCTATTGATATGGTATAA
Upstream 100 bases:
>100_bases ATAATGGCAAACATGGGGAAAATTCCAAAAGAAGGCGATGAGTTTGAATACAAAGGTTTTAAGTTTATAGTGGATAAAAT GGATGGTAAAAAGATAGAGC
Downstream 100 bases:
>100_bases TAATTTTAATCAAAAGCTGGAGGTATATAACTATGAACGATGAAGTGCTTTTAAAAGTGGAGGAGAAGATAAACCCACCA TCTCGCATATTGGAGGAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: Amidophosphoribosyltransferase-Like Protein; Competence Protein F; COMF Operon; Phosphoribosyl Transferase Domain Protein; Competence Protein ComFC; ComF Protein
Number of amino acids: Translated: 232; Mature: 232
Protein sequence:
>232_residues MYLSKYLRIKSQIAKIFDKLYIPDNVCLSCNNYFKPTLQGYVCDDCIASIKPMLFEKETLPYIDSYRIFSSYDKALKEMI IALKFKKASLFAKIIGDIVKDDFFAFVKSINPDIVTYVPVSFFRFWQRGYDQNDILLKALNAQYISILKRRRHAKPLSLS MDKNQREHIVSKAFKIRKEFVFNLEGKKVLVFDDILTTGATATQIARTLKMHAVKEVYFYFIASHKRAIDMV
Sequences:
>Translated_232_residues MYLSKYLRIKSQIAKIFDKLYIPDNVCLSCNNYFKPTLQGYVCDDCIASIKPMLFEKETLPYIDSYRIFSSYDKALKEMI IALKFKKASLFAKIIGDIVKDDFFAFVKSINPDIVTYVPVSFFRFWQRGYDQNDILLKALNAQYISILKRRRHAKPLSLS MDKNQREHIVSKAFKIRKEFVFNLEGKKVLVFDDILTTGATATQIARTLKMHAVKEVYFYFIASHKRAIDMV >Mature_232_residues MYLSKYLRIKSQIAKIFDKLYIPDNVCLSCNNYFKPTLQGYVCDDCIASIKPMLFEKETLPYIDSYRIFSSYDKALKEMI IALKFKKASLFAKIIGDIVKDDFFAFVKSINPDIVTYVPVSFFRFWQRGYDQNDILLKALNAQYISILKRRRHAKPLSLS MDKNQREHIVSKAFKIRKEFVFNLEGKKVLVFDDILTTGATATQIARTLKMHAVKEVYFYFIASHKRAIDMV
Specific function: Unknown
COG id: COG1040
COG function: function code R; Predicted amidophosphoribosyltransferases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27112; Mature: 27112
Theoretical pI: Translated: 10.04; Mature: 10.04
Prosite motif: PS00103 PUR_PYR_PR_TRANSFER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYLSKYLRIKSQIAKIFDKLYIPDNVCLSCNNYFKPTLQGYVCDDCIASIKPMLFEKETL CCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCC PYIDSYRIFSSYDKALKEMIIALKFKKASLFAKIIGDIVKDDFFAFVKSINPDIVTYVPV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHH SFFRFWQRGYDQNDILLKALNAQYISILKRRRHAKPLSLSMDKNQREHIVSKAFKIRKEF HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHH VFNLEGKKVLVFDDILTTGATATQIARTLKMHAVKEVYFYFIASHKRAIDMV HEECCCCEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC >Mature Secondary Structure MYLSKYLRIKSQIAKIFDKLYIPDNVCLSCNNYFKPTLQGYVCDDCIASIKPMLFEKETL CCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCC PYIDSYRIFSSYDKALKEMIIALKFKKASLFAKIIGDIVKDDFFAFVKSINPDIVTYVPV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHH SFFRFWQRGYDQNDILLKALNAQYISILKRRRHAKPLSLSMDKNQREHIVSKAFKIRKEF HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHH VFNLEGKKVLVFDDILTTGATATQIARTLKMHAVKEVYFYFIASHKRAIDMV HEECCCCEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA