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The map label for this gene is yfjD [C]

Identifier: 195952467

GI number: 195952467

Start: 80215

End: 81468

Strand: Direct

Name: yfjD [C]

Synonym: HY04AAS1_0087

Alternate gene names: 195952467

Gene position: 80215-81468 (Clockwise)

Preceding gene: 195952466

Following gene: 195952468

Centisome position: 5.14

GC content: 32.38

Gene sequence:

>1254_bases
ATGAATAGTATATTGCTTTATAGCCTTTTAATACTTTTTCTCATATTTTTATCTGGTTTTTTTGCCTCTTCGGAGGTTGT
GTTTTTTGGTGCTTCTAATATATTAGAAGAAAAGGATAAAAAGTTTTATAAAAAACTTATAGATAGAATATTTAAAGACC
CGCAAGCTCTTTTAGTGTCAATGCTCATTGGGAACGAGTTTGTAAATGTTTTAATATCTTCAGTGAGCTCTAGTTTTGTA
ATAAACCTGGTAGGCAAAAGATGGGTATTTTTATCTGGCATATTTATCAGTATATTGATATTTTTAATTGGTGAAACTAT
ACCTAAAAATATTGCTCTTTTCTTGAAAGATAGGCTTTTAAAGTTTTACGCGATCATATTTTATCCATATCTTGTAGCCA
CAAAGCCTTTTACTTACATTTTTGTAGCACCTGTAAAAAAGATATTAAAACTTTTTGGTGTTGAAAATATAAGCTTGGAA
AAGAAGTTTTCTTTAGAGCATATAGTTTATATAATGCAAAGTCCAGCAAACGCTCAGGAATTTTCAGAAGAAGAAACTCA
GATGATACAAAAAGTATCTCAGATGAGAGAAACTATAGTAAGAGAAATAATGACTCCAAGGCTTGATATATTTATGTTAG
AAGCAACCCAAACTGTAAAGGAAGTTATAAACGATATATTAGAGCATGAACATAGTAGGATACCTATATACAAAGATACA
AAAGACAATGTGGTTGGCTATATACATATAAAAGACCTTACGCCAGTTTATCAGCATAAAGACGATACGTTAGAGATTTT
TTTAAGACCTATTGAATTTATACCAGAGGTTATGAGTATAAAAAATCTACTTCAAGAGATGAAAAAATCTTCAAGTCAAA
TAATGATGGTGGTAGATGAGCACGGTGCCATATCTGGACTCATTACGAAACATGATTTGCTTGAATGGTTGGCAGGAGAT
TTACCTCAGGAGTGGGAAGATGAAAATGAGTTTACCAAGATGTCTTCAGATGTTTATATAGTGGAAGGTTCTGCCTCCAT
AGAAGAAGTCGCCGCTACCGTTGGTTTTGAACTCTCTGAGAACTACGATTACGATACGTTGAGCGGTTTTATAATGGCAA
ACATGGGGAAAATTCCAAAAGAAGGCGATGAGTTTGAATACAAAGGTTTTAAGTTTATAGTGGATAAAATGGATGGTAAA
AAGATAGAGCATGTACTTATCAAAATACCTACGGATAAAGAGCCAAATAGCTAA

Upstream 100 bases:

>100_bases
GTGGAAATAAGGGATAAAGAAGATATTTTTAAAAGCCCAAAACATGAGTTTACAAAGACACTTTTAAATAGCTATTCTCT
GGATTGCAAACAGTATTCCT

Downstream 100 bases:

>100_bases
GATTTTTGACAAACTTTACATACCAGACAACGTTTGTCTTAGTTGTAACAACTATTTTAAGCCGACGCTTCAGGGTTATG
TTTGCGATGATTGTATAGCA

Product: CBS domain containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MNSILLYSLLILFLIFLSGFFASSEVVFFGASNILEEKDKKFYKKLIDRIFKDPQALLVSMLIGNEFVNVLISSVSSSFV
INLVGKRWVFLSGIFISILIFLIGETIPKNIALFLKDRLLKFYAIIFYPYLVATKPFTYIFVAPVKKILKLFGVENISLE
KKFSLEHIVYIMQSPANAQEFSEEETQMIQKVSQMRETIVREIMTPRLDIFMLEATQTVKEVINDILEHEHSRIPIYKDT
KDNVVGYIHIKDLTPVYQHKDDTLEIFLRPIEFIPEVMSIKNLLQEMKKSSSQIMMVVDEHGAISGLITKHDLLEWLAGD
LPQEWEDENEFTKMSSDVYIVEGSASIEEVAATVGFELSENYDYDTLSGFIMANMGKIPKEGDEFEYKGFKFIVDKMDGK
KIEHVLIKIPTDKEPNS

Sequences:

>Translated_417_residues
MNSILLYSLLILFLIFLSGFFASSEVVFFGASNILEEKDKKFYKKLIDRIFKDPQALLVSMLIGNEFVNVLISSVSSSFV
INLVGKRWVFLSGIFISILIFLIGETIPKNIALFLKDRLLKFYAIIFYPYLVATKPFTYIFVAPVKKILKLFGVENISLE
KKFSLEHIVYIMQSPANAQEFSEEETQMIQKVSQMRETIVREIMTPRLDIFMLEATQTVKEVINDILEHEHSRIPIYKDT
KDNVVGYIHIKDLTPVYQHKDDTLEIFLRPIEFIPEVMSIKNLLQEMKKSSSQIMMVVDEHGAISGLITKHDLLEWLAGD
LPQEWEDENEFTKMSSDVYIVEGSASIEEVAATVGFELSENYDYDTLSGFIMANMGKIPKEGDEFEYKGFKFIVDKMDGK
KIEHVLIKIPTDKEPNS
>Mature_417_residues
MNSILLYSLLILFLIFLSGFFASSEVVFFGASNILEEKDKKFYKKLIDRIFKDPQALLVSMLIGNEFVNVLISSVSSSFV
INLVGKRWVFLSGIFISILIFLIGETIPKNIALFLKDRLLKFYAIIFYPYLVATKPFTYIFVAPVKKILKLFGVENISLE
KKFSLEHIVYIMQSPANAQEFSEEETQMIQKVSQMRETIVREIMTPRLDIFMLEATQTVKEVINDILEHEHSRIPIYKDT
KDNVVGYIHIKDLTPVYQHKDDTLEIFLRPIEFIPEVMSIKNLLQEMKKSSSQIMMVVDEHGAISGLITKHDLLEWLAGD
LPQEWEDENEFTKMSSDVYIVEGSASIEEVAATVGFELSENYDYDTLSGFIMANMGKIPKEGDEFEYKGFKFIVDKMDGK
KIEHVLIKIPTDKEPNS

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=288, Percent_Identity=26.3888888888889, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI94681046, Length=298, Percent_Identity=26.1744966442953, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI40068053, Length=335, Percent_Identity=24.1791044776119, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI40068055, Length=335, Percent_Identity=24.1791044776119, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI40068051, Length=305, Percent_Identity=23.9344262295082, Blast_Score=76, Evalue=6e-14,
Organism=Escherichia coli, GI145693175, Length=345, Percent_Identity=23.4782608695652, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1786879, Length=234, Percent_Identity=30.7692307692308, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1790664, Length=428, Percent_Identity=21.9626168224299, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87082033, Length=244, Percent_Identity=25.4098360655738, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1788119, Length=214, Percent_Identity=28.5046728971963, Blast_Score=99, Evalue=7e-22,
Organism=Saccharomyces cerevisiae, GI6324512, Length=336, Percent_Identity=24.1071428571429, Blast_Score=86, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 47949; Mature: 47949

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSILLYSLLILFLIFLSGFFASSEVVFFGASNILEEKDKKFYKKLIDRIFKDPQALLVS
CCHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
MLIGNEFVNVLISSVSSSFVINLVGKRWVFLSGIFISILIFLIGETIPKNIALFLKDRLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
KFYAIIFYPYLVATKPFTYIFVAPVKKILKLFGVENISLEKKFSLEHIVYIMQSPANAQE
HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCCCHHHHCHHHHHHHHCCCCCHHH
FSEEETQMIQKVSQMRETIVREIMTPRLDIFMLEATQTVKEVINDILEHEHSRIPIYKDT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCEECC
KDNVVGYIHIKDLTPVYQHKDDTLEIFLRPIEFIPEVMSIKNLLQEMKKSSSQIMMVVDE
CCCEEEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
HGAISGLITKHDLLEWLAGDLPQEWEDENEFTKMSSDVYIVEGSASIEEVAATVGFELSE
CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCEEEEECCCCHHHHHHHHCCEECC
NYDYDTLSGFIMANMGKIPKEGDEFEYKGFKFIVDKMDGKKIEHVLIKIPTDKEPNS
CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCC
>Mature Secondary Structure
MNSILLYSLLILFLIFLSGFFASSEVVFFGASNILEEKDKKFYKKLIDRIFKDPQALLVS
CCHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
MLIGNEFVNVLISSVSSSFVINLVGKRWVFLSGIFISILIFLIGETIPKNIALFLKDRLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
KFYAIIFYPYLVATKPFTYIFVAPVKKILKLFGVENISLEKKFSLEHIVYIMQSPANAQE
HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCCCHHHHCHHHHHHHHCCCCCHHH
FSEEETQMIQKVSQMRETIVREIMTPRLDIFMLEATQTVKEVINDILEHEHSRIPIYKDT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCEECC
KDNVVGYIHIKDLTPVYQHKDDTLEIFLRPIEFIPEVMSIKNLLQEMKKSSSQIMMVVDE
CCCEEEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
HGAISGLITKHDLLEWLAGDLPQEWEDENEFTKMSSDVYIVEGSASIEEVAATVGFELSE
CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCEEEEECCCCHHHHHHHHCCEECC
NYDYDTLSGFIMANMGKIPKEGDEFEYKGFKFIVDKMDGKKIEHVLIKIPTDKEPNS
CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]