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The map label for this gene is rsmE [H]

Identifier: 195952461

GI number: 195952461

Start: 73823

End: 74482

Strand: Direct

Name: rsmE [H]

Synonym: HY04AAS1_0081

Alternate gene names: 195952461

Gene position: 73823-74482 (Clockwise)

Preceding gene: 195952460

Following gene: 195952462

Centisome position: 4.73

GC content: 32.12

Gene sequence:

>660_bases
ATGCATAGGTTTTTTGCTTTTAGAAAAAATGGTACGATAGAGTTTTTTGAGGAAGATAAAAAGCATTTTAAAGTACTTAG
AATAGAAAAAAACGAACTTTTAGAGCTTGTTATAGAAGACAAAATATACGAAGCTAAATTCACAGGGCAAAATTTTGAGC
TTTTAGAAGAAAAAACAAAACCCCCAGATGTAAAAATATATGCAAACGTATGTATACCGATAAAGCTTCAAACGTTAGAA
ACAATAATAGATTATGCAGTACAAGGCGGTGTTTTTGAGATAACCCCTGTTTTTTGCAAAAGAAGTTTTCAAGATAGCTC
TAAGCTTTTGGAAAAGTATCAAAGGCTTCAAAAAATTTTAAAAGAAGCTATAAAGCAAAGTAGACCCTCTTTCTTGCCAA
AATTAAACCATCCTATTTCTTTACAGGATATAACATTACAAGGATACGGTATTGTTTTTGATAGTTTTGAAAAGCCCAAA
AACGATTTATTAAAAGACAACAAGTATACCCTTGTTTTTGGTCCAGAAGGAGGACTCTCCAAGGAGGAGGTGGAGTTTTT
AAAAGCTTTGGGATTTAATACTCATTCTTTGGGGGATAACATATTAAGAGAAGAGCTTGCGGTGTTTGCTGGTATTTTTA
TGATAAGATGTAAGTTGTAG

Upstream 100 bases:

>100_bases
TTAGTAAAAACAAACTATGACGAGGAAAAACTTACAATGGAGCTTACCATGCTTGAAATAGAAGGCTATATATCAAAAGA
CGGTGCTTATTTTGTGAAAA

Downstream 100 bases:

>100_bases
TTTGTATGATACAATTATATAAGTGGAGGTGTAAATATGGATTTGACTATGATAGTTGGAGGAAAAGCGGGTGCTGGTAT
AAAAGAAGCTGGTAGACTTA

Product: hypothetical protein

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MHRFFAFRKNGTIEFFEEDKKHFKVLRIEKNELLELVIEDKIYEAKFTGQNFELLEEKTKPPDVKIYANVCIPIKLQTLE
TIIDYAVQGGVFEITPVFCKRSFQDSSKLLEKYQRLQKILKEAIKQSRPSFLPKLNHPISLQDITLQGYGIVFDSFEKPK
NDLLKDNKYTLVFGPEGGLSKEEVEFLKALGFNTHSLGDNILREELAVFAGIFMIRCKL

Sequences:

>Translated_219_residues
MHRFFAFRKNGTIEFFEEDKKHFKVLRIEKNELLELVIEDKIYEAKFTGQNFELLEEKTKPPDVKIYANVCIPIKLQTLE
TIIDYAVQGGVFEITPVFCKRSFQDSSKLLEKYQRLQKILKEAIKQSRPSFLPKLNHPISLQDITLQGYGIVFDSFEKPK
NDLLKDNKYTLVFGPEGGLSKEEVEFLKALGFNTHSLGDNILREELAVFAGIFMIRCKL
>Mature_219_residues
MHRFFAFRKNGTIEFFEEDKKHFKVLRIEKNELLELVIEDKIYEAKFTGQNFELLEEKTKPPDVKIYANVCIPIKLQTLE
TIIDYAVQGGVFEITPVFCKRSFQDSSKLLEKYQRLQKILKEAIKQSRPSFLPKLNHPISLQDITLQGYGIVFDSFEKPK
NDLLKDNKYTLVFGPEGGLSKEEVEFLKALGFNTHSLGDNILREELAVFAGIFMIRCKL

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015947
- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 25430; Mature: 25430

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRFFAFRKNGTIEFFEEDKKHFKVLRIEKNELLELVIEDKIYEAKFTGQNFELLEEKTK
CCCEEEEECCCCEEEECCCCCCEEEEEECHHHHHHHHHHHHHEEEEECCCCHHHHHHCCC
PPDVKIYANVCIPIKLQTLETIIDYAVQGGVFEITPVFCKRSFQDSSKLLEKYQRLQKIL
CCCEEEEEEEEEEEEHHHHHHHHHHHHCCCEEEECHHHHHHCCCHHHHHHHHHHHHHHHH
KEAIKQSRPSFLPKLNHPISLQDITLQGYGIVFDSFEKPKNDLLKDNKYTLVFGPEGGLS
HHHHHHCCCCCCCCCCCCCCEEEEEEECCEEEECCCCCCHHHHHCCCCEEEEECCCCCCC
KEEVEFLKALGFNTHSLGDNILREELAVFAGIFMIRCKL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MHRFFAFRKNGTIEFFEEDKKHFKVLRIEKNELLELVIEDKIYEAKFTGQNFELLEEKTK
CCCEEEEECCCCEEEECCCCCCEEEEEECHHHHHHHHHHHHHEEEEECCCCHHHHHHCCC
PPDVKIYANVCIPIKLQTLETIIDYAVQGGVFEITPVFCKRSFQDSSKLLEKYQRLQKIL
CCCEEEEEEEEEEEEHHHHHHHHHHHHCCCEEEECHHHHHHCCCHHHHHHHHHHHHHHHH
KEAIKQSRPSFLPKLNHPISLQDITLQGYGIVFDSFEKPKNDLLKDNKYTLVFGPEGGLS
HHHHHHCCCCCCCCCCCCCCEEEEEEECCEEEECCCCCCHHHHHCCCCEEEEECCCCCCC
KEEVEFLKALGFNTHSLGDNILREELAVFAGIFMIRCKL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]