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The map label for this gene is ybdO [H]

Identifier: 194737844

GI number: 194737844

Start: 741365

End: 742270

Strand: Reverse

Name: ybdO [H]

Synonym: SeSA_A0764

Alternate gene names: 194737844

Gene position: 742270-741365 (Counterclockwise)

Preceding gene: 194734485

Following gene: 194738346

Centisome position: 15.76

GC content: 37.53

Gene sequence:

>906_bases
ATGGCTAATCTTTACGACCTTAAAAAATTTGATCTTAACTTGTTGGTTATATTTGAATGTATTTATCAACATTTAAGCAT
TAGCAAAGCGGCAGAAACTCTCTATATTACACCTTCTGCCGTAAGCCAGTCATTGCAACGCCTGCGCACGCAATTCAATG
ACCCTTTATTTATTCGTTCAGGTAAAGGAATTACGCCTACCGTAACAGGCATTAATTTACATTATCATTTAGAAAATAAC
CTTAACAGTCTGGAACAAACTATTAATATAATGAATCAGTCCAGTCTGAAGAAAAAGTTTATTATCTATAGCCCACAGCT
GTTGATCACCCAATATGTGATGAAATTAGTTGAATATATTCGCAAAGATTCACAGGTTGAAATTGAACATCACGACATTT
TGACCACTGACGAACAGCCTGAAGATCTTCTTGCCTACCGCAAAGCAGATATTGTGGTTTCAATGGCCCCACTCAATAAT
CGTTCTATTGTTTGTACTCACTTTAATAAGGTGGAATGTATCCTGGCTTGCAGTGAAAACCATCCCCGGCTAGGTGAAAC
CGCAACTATCGACGAAATTCTACAAGAGTCATTTACGCAATTCGTCGCCCGGAAAAACGATATAAAAGAGCATCATTCAG
TTATCCATGATATGCTGGGGGAAAGAATAATTGGTTTCAGAAGCAAATCGCTGATAACCATCGCCAACGCCATCAGCGCC
ACGGAGCTTATTGGTTTTTTACCACAATCACTTGTTGACTATTACTCATCCACTATCAAACTTAAAAAAGTCTCCATACC
TTTTACCATTGCTCCTGTACAACTCTATCTTATGTATAATAGAGCTTCGATGAATAATAGCGGATTTACTGAGCTCATTG
AGTACATTACAAAAAAGCATGAATAA

Upstream 100 bases:

>100_bases
TAAATAAACTCTACATTAAGTTTAATAAACATAATTCTGGTAAATTATTGAGATTAAGTCATAATCATGGAAGATACCAT
GATTATGCCTGGAAGATACT

Downstream 100 bases:

>100_bases
AAAGGTCAGGTAACGGGCATTAACATAAATTCAATCTATATATTTATAGAATGCATTTATTTAGTAAATATAATAAAGCA
TTGCAAGTTCATCTAATCTG

Product: transcriptional regulator, LysR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MANLYDLKKFDLNLLVIFECIYQHLSISKAAETLYITPSAVSQSLQRLRTQFNDPLFIRSGKGITPTVTGINLHYHLENN
LNSLEQTINIMNQSSLKKKFIIYSPQLLITQYVMKLVEYIRKDSQVEIEHHDILTTDEQPEDLLAYRKADIVVSMAPLNN
RSIVCTHFNKVECILACSENHPRLGETATIDEILQESFTQFVARKNDIKEHHSVIHDMLGERIIGFRSKSLITIANAISA
TELIGFLPQSLVDYYSSTIKLKKVSIPFTIAPVQLYLMYNRASMNNSGFTELIEYITKKHE

Sequences:

>Translated_301_residues
MANLYDLKKFDLNLLVIFECIYQHLSISKAAETLYITPSAVSQSLQRLRTQFNDPLFIRSGKGITPTVTGINLHYHLENN
LNSLEQTINIMNQSSLKKKFIIYSPQLLITQYVMKLVEYIRKDSQVEIEHHDILTTDEQPEDLLAYRKADIVVSMAPLNN
RSIVCTHFNKVECILACSENHPRLGETATIDEILQESFTQFVARKNDIKEHHSVIHDMLGERIIGFRSKSLITIANAISA
TELIGFLPQSLVDYYSSTIKLKKVSIPFTIAPVQLYLMYNRASMNNSGFTELIEYITKKHE
>Mature_300_residues
ANLYDLKKFDLNLLVIFECIYQHLSISKAAETLYITPSAVSQSLQRLRTQFNDPLFIRSGKGITPTVTGINLHYHLENNL
NSLEQTINIMNQSSLKKKFIIYSPQLLITQYVMKLVEYIRKDSQVEIEHHDILTTDEQPEDLLAYRKADIVVSMAPLNNR
SIVCTHFNKVECILACSENHPRLGETATIDEILQESFTQFVARKNDIKEHHSVIHDMLGERIIGFRSKSLITIANAISAT
ELIGFLPQSLVDYYSSTIKLKKVSIPFTIAPVQLYLMYNRASMNNSGFTELIEYITKKHE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786820, Length=298, Percent_Identity=53.0201342281879, Blast_Score=328, Evalue=3e-91,
Organism=Escherichia coli, GI87081766, Length=291, Percent_Identity=26.4604810996564, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI87081684, Length=297, Percent_Identity=22.8956228956229, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790147, Length=223, Percent_Identity=25.5605381165919, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34471; Mature: 34340

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANLYDLKKFDLNLLVIFECIYQHLSISKAAETLYITPSAVSQSLQRLRTQFNDPLFIRS
CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHCCCCEEEEC
GKGITPTVTGINLHYHLENNLNSLEQTINIMNQSSLKKKFIIYSPQLLITQYVMKLVEYI
CCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHH
RKDSQVEIEHHDILTTDEQPEDLLAYRKADIVVSMAPLNNRSIVCTHFNKVECILACSEN
CCCCCEEEECCCEECCCCCHHHHHHHHHHCEEEEECCCCCCEEEEEECCCEEEEEEECCC
HPRLGETATIDEILQESFTQFVARKNDIKEHHSVIHDMLGERIIGFRSKSLITIANAISA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
TELIGFLPQSLVDYYSSTIKLKKVSIPFTIAPVQLYLMYNRASMNNSGFTELIEYITKKH
HHHHHHHHHHHHHHHHHHEEEEEEECCEEECCEEEEEEEECCCCCCCCHHHHHHHHHHCC
E
C
>Mature Secondary Structure 
ANLYDLKKFDLNLLVIFECIYQHLSISKAAETLYITPSAVSQSLQRLRTQFNDPLFIRS
CCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHCCCCEEEEC
GKGITPTVTGINLHYHLENNLNSLEQTINIMNQSSLKKKFIIYSPQLLITQYVMKLVEYI
CCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHH
RKDSQVEIEHHDILTTDEQPEDLLAYRKADIVVSMAPLNNRSIVCTHFNKVECILACSEN
CCCCCEEEECCCEECCCCCHHHHHHHHHHCEEEEECCCCCCEEEEEECCCEEEEEEECCC
HPRLGETATIDEILQESFTQFVARKNDIKEHHSVIHDMLGERIIGFRSKSLITIANAISA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
TELIGFLPQSLVDYYSSTIKLKKVSIPFTIAPVQLYLMYNRASMNNSGFTELIEYITKKH
HHHHHHHHHHHHHHHHHHEEEEEEECCEEECCEEEEEEEECCCCCCCCHHHHHHHHHHCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]