BacMap

Definition	Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 chromosome, complete genome.
Accession	NC_011094
Length	4,709,075

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The map label for this gene is yghA [H]

Identifier: 194737525

GI number: 194737525

Start: 3223960

End: 3224844

Strand: Direct

Name: yghA [H]

Synonym: SeSA_A3340

Alternate gene names: 194737525

Gene position: 3223960-3224844 (Clockwise)

Preceding gene: 194735828

Following gene: 194736125

Centisome position: 68.46

GC content: 56.5

Gene sequence:

>885_bases
ATGTCTCATCTATACGACCCTACCACGCAGTATTACACCGGCGAATATCCTAAGCAAAAACAGCCGGCGCCCGGCGTCCA
GGCGAAAATGACGCCTGTTCCTGACTGTGGCGAAAAAAGTTATGTCGGCAGTGGTCGGCTTACAGATCGTAAGGCGCTGG
TGACAGGGGGCGACTCCGGGATTGGGCGCGCTGCAGCTATCGCTTACGCGCGTGAAGGCGCGGATGTCGCGATCAACTAT
CTGCCAGCGGAAGAAGAGGACGCCCAGCAGGTTAAAGCGCTGATTGAGGAGTGCGGCCGTAAAGCGGTGTTATTGCCAGG
CGATCTTAGCGACGAATCTTTCGCCCGTTCGCTGGTCCATAAGGCGCGTGAAGCGCTGGGCGGGCTGGACATTCTGGCGC
TGGTGGCCGGTAAACAGACGGCAATCCCGGAGATAAAAGATCTGACCAGCGAGCAATTTCAGCAAACCTTCGCCGTTAAC
GTTTTTGCCCTGTTCTGGATAACCCAGGAAGCAATTCCGCTGCTGCCAAAAGGCGCCAGTATTATCACAACGTCGTCTAT
CCAGGCGTATCAGCCCAGTCCGCACCTGCTGGATTATGCGGCAACCAAGGCGGCAATCCTCAATTACAGCCGTGGCCTGG
CGAAACAGGTGGCGGAAAAAGGAATCCGTGTGAATATTGTCGCGCCTGGTCCTATCTGGACAGCGCTGCAAATTTCCGGC
GGTCAAACACAGGATAAAATTCCGCAGTTTGGTCAGCAGACGCCAATGAAGCGGGCCGGCCAACCGGCAGAGCTGGCGCC
GGTGTATGTCTATCTGGCAAGCCAGGAATCCAGTTACGTTACCGCAGAAGTGCACGGCGTGTGCGGCGGGGAACATTTAG
GCTAA

Upstream 100 bases:

>100_bases
TGTGAATACGGGCGAAGCATAAGGATCGTTCTGATTCTCCCTCTTACGGTAGTAAAAGTGTCTACGCTTAAAGGGTGTTC
AACCTGAAGGGAGAAGCTCA

Downstream 100 bases:

>100_bases
CGCATGAAGTCGATTAAGATGGCGCACTTCTGTTAAGCAAGGCGCCATCTTAGGCAATAAAAAAGCCGGGTGGCGACTTC
GCCTTACCCGGCCTACAGCG

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MSHLYDPTTQYYTGEYPKQKQPAPGVQAKMTPVPDCGEKSYVGSGRLTDRKALVTGGDSGIGRAAAIAYAREGADVAINY
LPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVN
VFALFWITQEAIPLLPKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISG
GQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGGEHLG

Sequences:

>Translated_294_residues
MSHLYDPTTQYYTGEYPKQKQPAPGVQAKMTPVPDCGEKSYVGSGRLTDRKALVTGGDSGIGRAAAIAYAREGADVAINY
LPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVN
VFALFWITQEAIPLLPKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISG
GQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGGEHLG
>Mature_293_residues
SHLYDPTTQYYTGEYPKQKQPAPGVQAKMTPVPDCGEKSYVGSGRLTDRKALVTGGDSGIGRAAAIAYAREGADVAINYL
PAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNV
FALFWITQEAIPLLPKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGG
QTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGGEHLG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=30.8943089430894, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=30.0813008130081, Blast_Score=98, Evalue=9e-21,
Organism=Homo sapiens, GI15277342, Length=260, Percent_Identity=31.1538461538462, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI40254992, Length=248, Percent_Identity=29.0322580645161, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=32.4607329842932, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=27.7777777777778, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI19923817, Length=262, Percent_Identity=27.0992366412214, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI59889578, Length=232, Percent_Identity=28.8793103448276, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=30.6010928961749, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI4758504, Length=248, Percent_Identity=27.8225806451613, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI32455239, Length=182, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI5031765, Length=182, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI10190704, Length=253, Percent_Identity=28.0632411067194, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI31542939, Length=196, Percent_Identity=29.0816326530612, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI1789378, Length=294, Percent_Identity=92.8571428571429, Blast_Score=565, Evalue=1e-162,
Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=36.5853658536585, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI2367365, Length=246, Percent_Identity=32.520325203252, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=32.3886639676113, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=31.3008130081301, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI87082100, Length=260, Percent_Identity=29.6153846153846, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=29.7959183673469, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=28.1124497991968, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=27.2, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=28.0487804878049, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786812, Length=259, Percent_Identity=27.4131274131274, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787526, Length=240, Percent_Identity=32.9166666666667, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1786701, Length=211, Percent_Identity=28.9099526066351, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71994604, Length=248, Percent_Identity=30.6451612903226, Blast_Score=101, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17560676, Length=252, Percent_Identity=30.952380952381, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=30.8, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17531453, Length=269, Percent_Identity=30.8550185873606, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=28.8973384030418, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=30.8270676691729, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17560150, Length=265, Percent_Identity=31.3207547169811, Blast_Score=97, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI17562904, Length=251, Percent_Identity=30.2788844621514, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=30.5343511450382, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17551412, Length=281, Percent_Identity=29.1814946619217, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17562990, Length=265, Percent_Identity=33.5849056603774, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17560332, Length=270, Percent_Identity=31.1111111111111, Blast_Score=95, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=30.8270676691729, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17538480, Length=252, Percent_Identity=29.3650793650794, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI25147288, Length=258, Percent_Identity=31.0077519379845, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17563726, Length=248, Percent_Identity=30.241935483871, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17544670, Length=253, Percent_Identity=28.4584980237154, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=28.4, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=28.9473684210526, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=32.5757575757576, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17508651, Length=254, Percent_Identity=28.740157480315, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17538486, Length=270, Percent_Identity=30.3703703703704, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17538182, Length=247, Percent_Identity=31.5789473684211, Blast_Score=81, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17555706, Length=255, Percent_Identity=29.0196078431373, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17564282, Length=195, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=267, Percent_Identity=29.2134831460674, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI115534694, Length=252, Percent_Identity=28.1746031746032, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17536651, Length=255, Percent_Identity=23.5294117647059, Blast_Score=66, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=246, Percent_Identity=25.2032520325203, Blast_Score=71, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=30.4, Blast_Score=108, Evalue=6e-24,
Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=31.4741035856574, Blast_Score=106, Evalue=2e-23,
Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=30.4, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI21355319, Length=240, Percent_Identity=29.1666666666667, Blast_Score=95, Evalue=6e-20,
Organism=Drosophila melanogaster, GI23397609, Length=254, Percent_Identity=29.1338582677165, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24639444, Length=256, Percent_Identity=31.25, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI17737361, Length=263, Percent_Identity=27.7566539923954, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24644337, Length=232, Percent_Identity=29.7413793103448, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24643142, Length=238, Percent_Identity=30.672268907563, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24584748, Length=209, Percent_Identity=29.1866028708134, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI161076933, Length=209, Percent_Identity=29.1866028708134, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 31412; Mature: 31281

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHLYDPTTQYYTGEYPKQKQPAPGVQAKMTPVPDCGEKSYVGSGRLTDRKALVTGGDSG
CCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
IGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVH
CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH
KAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGAS
HHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
IITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISG
EEEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECC
GQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGGEHLG
CCCHHHHHHHCCCCCHHHCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCC
>Mature Secondary Structure 
SHLYDPTTQYYTGEYPKQKQPAPGVQAKMTPVPDCGEKSYVGSGRLTDRKALVTGGDSG
CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
IGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVH
CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH
KAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGAS
HHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
IITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISG
EEEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECC
GQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGGEHLG
CCCHHHHHHHCCCCCHHHCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]