Click here to switch to the map view.

The map label for this gene is ycaD [H]

Identifier: 194736955

GI number: 194736955

Start: 1058119

End: 1059267

Strand: Direct

Name: ycaD [H]

Synonym: SeSA_A1081

Alternate gene names: 194736955

Gene position: 1058119-1059267 (Clockwise)

Preceding gene: 194736452

Following gene: 194735476

Centisome position: 22.47

GC content: 51.61

Gene sequence:

>1149_bases
ATGTCCACCTATACCCGTCCCGTCATGCTTTTGCTGTGCGGGCTACTTTTGTTGACCCTGGCCATTGCGGTACTGAATAC
GCTTGTGCCGCTGTGGCTTGCTCAGGCAAACCTTCCGACCTGGCAGGTGGGGATGGTCAGCTCGTCTTATTTTACCGGCA
ATCTGGTCGGGACGTTATTTACCGGGTATTTAATTAAACGCATTGGGTTTAACCGTAGCTATTATCTTGCCTCGCTGATC
TTCGCCGCGGGTTGTGTCGGGTTGGGGGTGATGGTGGGGTTCTGGAGCTGGATGAGCTGGCGTTTTATTGCCGGTATCGG
CTGCGCTATGATTTGGGTGGTTGTCGAAAGCGCGTTGATGTGCAGCGGAACCTCGCATAATCGCGGGCGCCTGCTGGCTG
CCTATATGATGGTCTATTACATGGGGACCTTCCTTGGACAATTATTGGTCAGTAAAGTGTCTGGTGAATTGCTGCACGTC
CTTCCCTGGGTGACCGGAATGATTCTGGCGGGAATTCTGCCGCTACTCTTTACCCGGATTGTAAATCAGCAAACACAGGC
ACGTCATTCCTCTTCTATTAGCGCCATGCTGAAGCTACGCCAGGCGCGTCTTGGCGTGAATGGTTGTATTATTTCCGGCA
TTGTTCTTGGTTCATTATATGGTCTGATGCCGTTATATCTGAAGCATCAGGGGATGGCTAACGCCAGCATCGGTTTCTGG
ATGGCGGTACTGGTGAGCGCCGGTATTTTGGGGCAATGGCCAATGGGACGTCTGGCGGACAAATTTGGTCGCTTGCTGGT
ATTACGCGTACAGGTATTCGTTGTCATACTCGGTAGTATTGCCATGTTAACCCAGGCGGCGATGGCGCCAGCTCTGTTTA
TTCTGGGGGCGGCGGGTTTTACGCTTTATCCCGTCGCAATGGCCTGGGCCTGTGAAAAAGTCGAACATCACCAGCTTGTG
GCAATGAACCAGGCGCTGTTGTTAAGTTATACAGTAGGGAGCCTGTTGGGGCCGTCTTTTGCTGCGATGTTAATGCAGAA
TTATTCAGATAATCTGCTGTTTATTATGATCGCCAGCGTATCGTTTATTTATCTGCTGATGCTGTTACGTAACGCCGGCC
AGACGCCTAATCCTGTCGCCCACATCTAA

Upstream 100 bases:

>100_bases
AGTCTCAAAACTTGCGGATCGCCCATGCGGAGCCGATTGACAATGTTTTTGGCGATGGCATGATGCGCATGAAATTTGAA
CTTCCTCACGGTTTTTATTC

Downstream 100 bases:

>100_bases
CTGTTCTCTGAATCGTATGCAGGACGTGAGTCTTGCATACTCTTTGTTTATGTTTTACGTAAAATAATTGACCTGCATAA
TTTTCTTGCTTTACTGAAAA

Product: putative MFS family transporter protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MSTYTRPVMLLLCGLLLLTLAIAVLNTLVPLWLAQANLPTWQVGMVSSSYFTGNLVGTLFTGYLIKRIGFNRSYYLASLI
FAAGCVGLGVMVGFWSWMSWRFIAGIGCAMIWVVVESALMCSGTSHNRGRLLAAYMMVYYMGTFLGQLLVSKVSGELLHV
LPWVTGMILAGILPLLFTRIVNQQTQARHSSSISAMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLKHQGMANASIGFW
MAVLVSAGILGQWPMGRLADKFGRLLVLRVQVFVVILGSIAMLTQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHQLV
AMNQALLLSYTVGSLLGPSFAAMLMQNYSDNLLFIMIASVSFIYLLMLLRNAGQTPNPVAHI

Sequences:

>Translated_382_residues
MSTYTRPVMLLLCGLLLLTLAIAVLNTLVPLWLAQANLPTWQVGMVSSSYFTGNLVGTLFTGYLIKRIGFNRSYYLASLI
FAAGCVGLGVMVGFWSWMSWRFIAGIGCAMIWVVVESALMCSGTSHNRGRLLAAYMMVYYMGTFLGQLLVSKVSGELLHV
LPWVTGMILAGILPLLFTRIVNQQTQARHSSSISAMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLKHQGMANASIGFW
MAVLVSAGILGQWPMGRLADKFGRLLVLRVQVFVVILGSIAMLTQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHQLV
AMNQALLLSYTVGSLLGPSFAAMLMQNYSDNLLFIMIASVSFIYLLMLLRNAGQTPNPVAHI
>Mature_381_residues
STYTRPVMLLLCGLLLLTLAIAVLNTLVPLWLAQANLPTWQVGMVSSSYFTGNLVGTLFTGYLIKRIGFNRSYYLASLIF
AAGCVGLGVMVGFWSWMSWRFIAGIGCAMIWVVVESALMCSGTSHNRGRLLAAYMMVYYMGTFLGQLLVSKVSGELLHVL
PWVTGMILAGILPLLFTRIVNQQTQARHSSSISAMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLKHQGMANASIGFWM
AVLVSAGILGQWPMGRLADKFGRLLVLRVQVFVVILGSIAMLTQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHQLVA
MNQALLLSYTVGSLLGPSFAAMLMQNYSDNLLFIMIASVSFIYLLMLLRNAGQTPNPVAHI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=382, Percent_Identity=88.2198952879581, Blast_Score=665, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41549; Mature: 41418

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS50850 MFS ; PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
6.3 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTYTRPVMLLLCGLLLLTLAIAVLNTLVPLWLAQANLPTWQVGMVSSSYFTGNLVGTLF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH
TGYLIKRIGFNRSYYLASLIFAAGCVGLGVMVGFWSWMSWRFIAGIGCAMIWVVVESALM
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CSGTSHNRGRLLAAYMMVYYMGTFLGQLLVSKVSGELLHVLPWVTGMILAGILPLLFTRI
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VNQQTQARHSSSISAMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLKHQGMANASIGFW
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
MAVLVSAGILGQWPMGRLADKFGRLLVLRVQVFVVILGSIAMLTQAAMAPALFILGAAGF
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
TLYPVAMAWACEKVEHHQLVAMNQALLLSYTVGSLLGPSFAAMLMQNYSDNLLFIMIASV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
SFIYLLMLLRNAGQTPNPVAHI
HHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
STYTRPVMLLLCGLLLLTLAIAVLNTLVPLWLAQANLPTWQVGMVSSSYFTGNLVGTLF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH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HHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA