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The map label for this gene is dmsB [H]

Identifier: 194736806

GI number: 194736806

Start: 4444921

End: 4445547

Strand: Direct

Name: dmsB [H]

Synonym: SeSA_A4561

Alternate gene names: 194736806

Gene position: 4444921-4445547 (Clockwise)

Preceding gene: 194737767

Following gene: 194736181

Centisome position: 94.39

GC content: 53.75

Gene sequence:

>627_bases
ATGAAACAGTATGGCTTTTATGTTGACTCCTCGCGCTGTTCAGGCTGTAAAACCTGCCAGGTAAGCTGCAAGGATAATAA
AGATCTGGATGTCGGTCCGAAACTGCGCCGCGTCTATGAATATGGCGGCGGAAGCTGGGTGAAAGAGGGGGAAAGCTGGC
ATCACGACACCTTTACCTACTACCTCTCTATTGCTTGTAACCATTGCGATGAGCCGGTATGTGTCTCCGGCTGTCCGACC
GGGGCGATGCATAAACGCAAAGAGGATGGTCTGGTAGTGGTGGATGACAGCGTATGCGTCGGCTGCCGCTATTGTGAAAT
GCGCTGCCCCTACGGCGCGCCGCAGTTTGATACGCAGGCGAACGTGATGCGTAAATGCGACGGTTGTCTTGACCGACTGG
AGAACAATCTGCGCCCTATTTGTGTGGATTCTTGCCCGCAGCGAGCGCTGGATTTTGGCCCTGTCGATGAATTACGGGCA
AAATATGGCACGGAGAATCAAATTGCGCCGCTGCCTTCGGCGTCGTTCACCCATCCTAACCTCATTATTAAACCGCATCC
GAAAGCGAGACCCACAGGCGATACGGAAGGCGCAATCATGAACATTCGGGAGGTGCGCCATGCATGA

Upstream 100 bases:

>100_bases
ATCAATACGCTGACCAGCCACCATCCTTCGCCGCTGGCGAAAGGCAATCCGCAGCATACCAATCTGGTTGAAATTAAACG
CGCTTAAGGAGTGATGTACG

Downstream 100 bases:

>100_bases
GTTACCGCTGGTCTTTTTTACGGTCTTTACCCAGAGCGCGGTCGGCGCGTTTATTCTGCTGCTGATTGGCGGCGCAATGG
GGCTGGTCGCGCCGCGGCGT

Product: dimethylsulfoxide reductase, chain B

Products: NA

Alternate protein names: DMSO reductase iron-sulfur subunit [H]

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MKQYGFYVDSSRCSGCKTCQVSCKDNKDLDVGPKLRRVYEYGGGSWVKEGESWHHDTFTYYLSIACNHCDEPVCVSGCPT
GAMHKRKEDGLVVVDDSVCVGCRYCEMRCPYGAPQFDTQANVMRKCDGCLDRLENNLRPICVDSCPQRALDFGPVDELRA
KYGTENQIAPLPSASFTHPNLIIKPHPKARPTGDTEGAIMNIREVRHA

Sequences:

>Translated_208_residues
MKQYGFYVDSSRCSGCKTCQVSCKDNKDLDVGPKLRRVYEYGGGSWVKEGESWHHDTFTYYLSIACNHCDEPVCVSGCPT
GAMHKRKEDGLVVVDDSVCVGCRYCEMRCPYGAPQFDTQANVMRKCDGCLDRLENNLRPICVDSCPQRALDFGPVDELRA
KYGTENQIAPLPSASFTHPNLIIKPHPKARPTGDTEGAIMNIREVRHA
>Mature_208_residues
MKQYGFYVDSSRCSGCKTCQVSCKDNKDLDVGPKLRRVYEYGGGSWVKEGESWHHDTFTYYLSIACNHCDEPVCVSGCPT
GAMHKRKEDGLVVVDDSVCVGCRYCEMRCPYGAPQFDTQANVMRKCDGCLDRLENNLRPICVDSCPQRALDFGPVDELRA
KYGTENQIAPLPSASFTHPNLIIKPHPKARPTGDTEGAIMNIREVRHA

Specific function: Electron transfer subunit of the terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787122, Length=203, Percent_Identity=60.0985221674877, Blast_Score=273, Evalue=7e-75,
Organism=Escherichia coli, GI1787872, Length=203, Percent_Identity=59.6059113300493, Blast_Score=272, Evalue=1e-74,
Organism=Escherichia coli, GI1789370, Length=201, Percent_Identity=29.3532338308458, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1787749, Length=182, Percent_Identity=29.1208791208791, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI226510944, Length=156, Percent_Identity=34.6153846153846, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1790326, Length=183, Percent_Identity=28.4153005464481, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI2367345, Length=156, Percent_Identity=32.0512820512821, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1787478, Length=162, Percent_Identity=29.6296296296296, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787740, Length=125, Percent_Identity=34.4, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI2367245, Length=156, Percent_Identity=27.5641025641026, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787963, Length=149, Percent_Identity=26.8456375838926, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI87082179, Length=159, Percent_Identity=28.3018867924528, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI87082180, Length=148, Percent_Identity=27.027027027027, Blast_Score=61, Evalue=6e-11,
Organism=Escherichia coli, GI87082114, Length=194, Percent_Identity=24.7422680412371, Blast_Score=60, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR014297 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 23219; Mature: 23219

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
10.1 %Cys+Met (Translated Protein)
7.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
10.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQYGFYVDSSRCSGCKTCQVSCKDNKDLDVGPKLRRVYEYGGGSWVKEGESWHHDTFTY
CCCCCEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCEECCCCCCCCCCEEE
YLSIACNHCDEPVCVSGCPTGAMHKRKEDGLVVVDDSVCVGCRYCEMRCPYGAPQFDTQA
EEEEEECCCCCCEEECCCCCCCCCCCCCCCEEEEECCEEECEEEEEEECCCCCCCCCHHH
NVMRKCDGCLDRLENNLRPICVDSCPQRALDFGPVDELRAKYGTENQIAPLPSASFTHPN
HHHHHHHHHHHHHHCCCCEEEECCCCHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCE
LIIKPHPKARPTGDTEGAIMNIREVRHA
EEECCCCCCCCCCCCCCCEEHHHHHHCC
>Mature Secondary Structure
MKQYGFYVDSSRCSGCKTCQVSCKDNKDLDVGPKLRRVYEYGGGSWVKEGESWHHDTFTY
CCCCCEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCEECCCCCCCCCCEEE
YLSIACNHCDEPVCVSGCPTGAMHKRKEDGLVVVDDSVCVGCRYCEMRCPYGAPQFDTQA
EEEEEECCCCCCEEECCCCCCCCCCCCCCCEEEEECCEEECEEEEEEECCCCCCCCCHHH
NVMRKCDGCLDRLENNLRPICVDSCPQRALDFGPVDELRAKYGTENQIAPLPSASFTHPN
HHHHHHHHHHHHHHCCCCEEEECCCCHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCE
LIIKPHPKARPTGDTEGAIMNIREVRHA
EEECCCCCCCCCCCCCCCEEHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 2174699; 1653010 [H]